miRNA display CGI


Results 81 - 100 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 3' -64.1 NC_001650.1 + 124580 0.77 0.13709
Target:  5'- -uCGCUCaUGGGCGCgaCCCCCGGCg -3'
miRNA:   3'- guGCGAGgACCCGCGgaGGGGGCUGg -5'
3617 3' -64.1 NC_001650.1 + 124748 0.67 0.538623
Target:  5'- gGCGCUCCcucGGCGCCgaaCUCGACa -3'
miRNA:   3'- gUGCGAGGac-CCGCGGaggGGGCUGg -5'
3617 3' -64.1 NC_001650.1 + 125046 0.78 0.127526
Target:  5'- gACGCcgggcgGGGCGCCUCgCCCGGCCa -3'
miRNA:   3'- gUGCGagga--CCCGCGGAGgGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 125721 0.66 0.594885
Target:  5'- --aGUUCCUaucgcuuGGCGCaCUuucgcCCCCCGACCu -3'
miRNA:   3'- gugCGAGGAc------CCGCG-GA-----GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 127344 0.72 0.280418
Target:  5'- gCAgGCUCCgGGGCccggugGUCUCCCCUGugUg -3'
miRNA:   3'- -GUgCGAGGaCCCG------CGGAGGGGGCugG- -5'
3617 3' -64.1 NC_001650.1 + 127777 0.69 0.432721
Target:  5'- cCugGC-CCUGGGCggucGCC-CCCCUcGCCc -3'
miRNA:   3'- -GugCGaGGACCCG----CGGaGGGGGcUGG- -5'
3617 3' -64.1 NC_001650.1 + 128389 0.66 0.585417
Target:  5'- cCGCGUUCCUcGcGGCcaccGCCUCCCUCaGCg -3'
miRNA:   3'- -GUGCGAGGA-C-CCG----CGGAGGGGGcUGg -5'
3617 3' -64.1 NC_001650.1 + 128580 0.66 0.604376
Target:  5'- aACGCggaCUGGGCccaccgccccGCCgagCCCgUGACCc -3'
miRNA:   3'- gUGCGag-GACCCG----------CGGa--GGGgGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 128734 0.68 0.500333
Target:  5'- uCACGUcCCgcgaggggagggGGGCGCCguguccaggaCCCUGACCg -3'
miRNA:   3'- -GUGCGaGGa-----------CCCGCGGag--------GGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 129110 0.66 0.632933
Target:  5'- cCGCGCuUCCUGaGacaCUCCCCCGcGCCc -3'
miRNA:   3'- -GUGCG-AGGACcCgcgGAGGGGGC-UGG- -5'
3617 3' -64.1 NC_001650.1 + 129536 0.69 0.416253
Target:  5'- -cUGCUCCUGGGCcgcguaguCCUUCCUCaGGCCc -3'
miRNA:   3'- guGCGAGGACCCGc-------GGAGGGGG-CUGG- -5'
3617 3' -64.1 NC_001650.1 + 130171 0.67 0.547892
Target:  5'- cCGCGC-CaC-GGGCGCCUCCaggggcgugCCCG-CCa -3'
miRNA:   3'- -GUGCGaG-GaCCCGCGGAGG---------GGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 130511 0.66 0.604376
Target:  5'- -cCGCggccagCCUGGcGUugGCCUCCCCCcGCg -3'
miRNA:   3'- guGCGa-----GGACC-CG--CGGAGGGGGcUGg -5'
3617 3' -64.1 NC_001650.1 + 131333 0.66 0.604376
Target:  5'- gGCGCcagUCUcagGGGCGCCccggagggacUCCCCUcGCCu -3'
miRNA:   3'- gUGCG---AGGa--CCCGCGG----------AGGGGGcUGG- -5'
3617 3' -64.1 NC_001650.1 + 131959 0.68 0.508442
Target:  5'- cCACGUggUCCUGGGCcagcuguggagcacGCUgCCCCCG-CUg -3'
miRNA:   3'- -GUGCG--AGGACCCG--------------CGGaGGGGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 132616 0.67 0.529408
Target:  5'- gGCGCUggcccccaaCCUGcaGGCgGCCUCCCCCauccCCa -3'
miRNA:   3'- gUGCGA---------GGAC--CCG-CGGAGGGGGcu--GG- -5'
3617 3' -64.1 NC_001650.1 + 132765 0.67 0.566575
Target:  5'- --aGCUCCaccggGGGCGCgUCgCCCGGg- -3'
miRNA:   3'- gugCGAGGa----CCCGCGgAGgGGGCUgg -5'
3617 3' -64.1 NC_001650.1 + 133509 0.71 0.339969
Target:  5'- gGCGcCUCCUGGGCagcccCCUCCCCuucucuCGGCg -3'
miRNA:   3'- gUGC-GAGGACCCGc----GGAGGGG------GCUGg -5'
3617 3' -64.1 NC_001650.1 + 133535 0.67 0.575979
Target:  5'- gAUGCUgCUcGGGCGUC-CCCUCG-CCc -3'
miRNA:   3'- gUGCGAgGA-CCCGCGGaGGGGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 133912 0.68 0.463293
Target:  5'- gGCGC-CCagaguacagcuggGGGCGCC-CCCCaGACCc -3'
miRNA:   3'- gUGCGaGGa------------CCCGCGGaGGGGgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.