Results 101 - 120 of 120 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 134097 | 0.67 | 0.547892 |
Target: 5'- cCGCGgUCCcagGGGCgGCCUCUagaggCGACCg -3' miRNA: 3'- -GUGCgAGGa--CCCG-CGGAGGgg---GCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 136153 | 0.75 | 0.186546 |
Target: 5'- cCAUGCgCCUGaaGGCGCC-CCCCgCGGCCu -3' miRNA: 3'- -GUGCGaGGAC--CCGCGGaGGGG-GCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 136841 | 0.7 | 0.392284 |
Target: 5'- -cCGCggagCCUcaGGGCGCCccgacgCCCCCGGgCg -3' miRNA: 3'- guGCGa---GGA--CCCGCGGa-----GGGGGCUgG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 141175 | 0.67 | 0.557211 |
Target: 5'- gGCGCgaacUCUGGGUGa---CCCCGGCCc -3' miRNA: 3'- gUGCGa---GGACCCGCggagGGGGCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 141872 | 0.7 | 0.364734 |
Target: 5'- cCACGCUCgCUccacacggugacuucGGGCGCgcuCUCCCCCuaGGCUa -3' miRNA: 3'- -GUGCGAG-GA---------------CCCGCG---GAGGGGG--CUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 142761 | 0.71 | 0.346404 |
Target: 5'- gGCGguCUCCaGGGCGUUUCCCCagggcggCGGCCg -3' miRNA: 3'- gUGC--GAGGaCCCGCGGAGGGG-------GCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 143847 | 0.68 | 0.48429 |
Target: 5'- uCGCGCgUCUUGcGGgGCCUCUCgCGGuCCa -3' miRNA: 3'- -GUGCG-AGGAC-CCgCGGAGGGgGCU-GG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 147792 | 0.75 | 0.200003 |
Target: 5'- aCACGCUCCUGGaGaGCCUgCCgCGACg -3' miRNA: 3'- -GUGCGAGGACC-CgCGGAgGGgGCUGg -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 147871 | 0.71 | 0.339969 |
Target: 5'- aGCgGCUCCcGGccGCGCUUCCCaCCGGCUc -3' miRNA: 3'- gUG-CGAGGaCC--CGCGGAGGG-GGCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 155142 | 0.66 | 0.585417 |
Target: 5'- cCugGCaaaguuccagUCCUGGGC-CCUCCuCCCGu-- -3' miRNA: 3'- -GugCG----------AGGACCCGcGGAGG-GGGCugg -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 155267 | 0.67 | 0.537699 |
Target: 5'- gCAgGCaCCUGGGCcugcucuGCgaCCCCuCGGCCg -3' miRNA: 3'- -GUgCGaGGACCCG-------CGgaGGGG-GCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 156453 | 0.66 | 0.591095 |
Target: 5'- gGCGUgagCCUGGGgGCagaaguguccaCCCUGGCCu -3' miRNA: 3'- gUGCGa--GGACCCgCGgag--------GGGGCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 157284 | 0.66 | 0.604376 |
Target: 5'- cCAUGCgCCUGGGgGgcaCCUccccgCCCCCGcCCu -3' miRNA: 3'- -GUGCGaGGACCCgC---GGA-----GGGGGCuGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 158480 | 0.72 | 0.280418 |
Target: 5'- gCAUGCcCCUGGGCauccagGCCUCCa-CGGCCg -3' miRNA: 3'- -GUGCGaGGACCCG------CGGAGGggGCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 164659 | 0.66 | 0.591095 |
Target: 5'- cCGgGCUCCcGGGgGaCCgcggcgcucaaccCCCCCGACUc -3' miRNA: 3'- -GUgCGAGGaCCCgC-GGa------------GGGGGCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 165683 | 0.71 | 0.339969 |
Target: 5'- -cCGC-CCcGGGUGCUUCCUCgGGCCg -3' miRNA: 3'- guGCGaGGaCCCGCGGAGGGGgCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 166983 | 0.68 | 0.520251 |
Target: 5'- gCACGUaCCUGcacaGCGCC-CCCugCCGGCCg -3' miRNA: 3'- -GUGCGaGGACc---CGCGGaGGG--GGCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 168958 | 0.66 | 0.594885 |
Target: 5'- aACcCUUCaUGGGUaCCUCCCCCcuGGCCu -3' miRNA: 3'- gUGcGAGG-ACCCGcGGAGGGGG--CUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 175579 | 0.66 | 0.622454 |
Target: 5'- gACGCUgCCUGGgagcggcGCGCCcUCCCUGAgUa -3' miRNA: 3'- gUGCGA-GGACC-------CGCGGaGGGGGCUgG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 180394 | 0.66 | 0.585417 |
Target: 5'- --aGgUCaggGGGCGUCUCCaugauguaCCCGGCCa -3' miRNA: 3'- gugCgAGga-CCCGCGGAGG--------GGGCUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home