miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 3' -64.1 NC_001650.1 + 180394 0.66 0.585417
Target:  5'- --aGgUCaggGGGCGUCUCCaugauguaCCCGGCCa -3'
miRNA:   3'- gugCgAGga-CCCGCGGAGG--------GGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 175579 0.66 0.622454
Target:  5'- gACGCUgCCUGGgagcggcGCGCCcUCCCUGAgUa -3'
miRNA:   3'- gUGCGA-GGACC-------CGCGGaGGGGGCUgG- -5'
3617 3' -64.1 NC_001650.1 + 168958 0.66 0.594885
Target:  5'- aACcCUUCaUGGGUaCCUCCCCCcuGGCCu -3'
miRNA:   3'- gUGcGAGG-ACCCGcGGAGGGGG--CUGG- -5'
3617 3' -64.1 NC_001650.1 + 166983 0.68 0.520251
Target:  5'- gCACGUaCCUGcacaGCGCC-CCCugCCGGCCg -3'
miRNA:   3'- -GUGCGaGGACc---CGCGGaGGG--GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 165683 0.71 0.339969
Target:  5'- -cCGC-CCcGGGUGCUUCCUCgGGCCg -3'
miRNA:   3'- guGCGaGGaCCCGCGGAGGGGgCUGG- -5'
3617 3' -64.1 NC_001650.1 + 164659 0.66 0.591095
Target:  5'- cCGgGCUCCcGGGgGaCCgcggcgcucaaccCCCCCGACUc -3'
miRNA:   3'- -GUgCGAGGaCCCgC-GGa------------GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 158480 0.72 0.280418
Target:  5'- gCAUGCcCCUGGGCauccagGCCUCCa-CGGCCg -3'
miRNA:   3'- -GUGCGaGGACCCG------CGGAGGggGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 157284 0.66 0.604376
Target:  5'- cCAUGCgCCUGGGgGgcaCCUccccgCCCCCGcCCu -3'
miRNA:   3'- -GUGCGaGGACCCgC---GGA-----GGGGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 156453 0.66 0.591095
Target:  5'- gGCGUgagCCUGGGgGCagaaguguccaCCCUGGCCu -3'
miRNA:   3'- gUGCGa--GGACCCgCGgag--------GGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 155267 0.67 0.537699
Target:  5'- gCAgGCaCCUGGGCcugcucuGCgaCCCCuCGGCCg -3'
miRNA:   3'- -GUgCGaGGACCCG-------CGgaGGGG-GCUGG- -5'
3617 3' -64.1 NC_001650.1 + 155142 0.66 0.585417
Target:  5'- cCugGCaaaguuccagUCCUGGGC-CCUCCuCCCGu-- -3'
miRNA:   3'- -GugCG----------AGGACCCGcGGAGG-GGGCugg -5'
3617 3' -64.1 NC_001650.1 + 147871 0.71 0.339969
Target:  5'- aGCgGCUCCcGGccGCGCUUCCCaCCGGCUc -3'
miRNA:   3'- gUG-CGAGGaCC--CGCGGAGGG-GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 147792 0.75 0.200003
Target:  5'- aCACGCUCCUGGaGaGCCUgCCgCGACg -3'
miRNA:   3'- -GUGCGAGGACC-CgCGGAgGGgGCUGg -5'
3617 3' -64.1 NC_001650.1 + 143847 0.68 0.48429
Target:  5'- uCGCGCgUCUUGcGGgGCCUCUCgCGGuCCa -3'
miRNA:   3'- -GUGCG-AGGAC-CCgCGGAGGGgGCU-GG- -5'
3617 3' -64.1 NC_001650.1 + 142761 0.71 0.346404
Target:  5'- gGCGguCUCCaGGGCGUUUCCCCagggcggCGGCCg -3'
miRNA:   3'- gUGC--GAGGaCCCGCGGAGGGG-------GCUGG- -5'
3617 3' -64.1 NC_001650.1 + 141872 0.7 0.364734
Target:  5'- cCACGCUCgCUccacacggugacuucGGGCGCgcuCUCCCCCuaGGCUa -3'
miRNA:   3'- -GUGCGAG-GA---------------CCCGCG---GAGGGGG--CUGG- -5'
3617 3' -64.1 NC_001650.1 + 141175 0.67 0.557211
Target:  5'- gGCGCgaacUCUGGGUGa---CCCCGGCCc -3'
miRNA:   3'- gUGCGa---GGACCCGCggagGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 136841 0.7 0.392284
Target:  5'- -cCGCggagCCUcaGGGCGCCccgacgCCCCCGGgCg -3'
miRNA:   3'- guGCGa---GGA--CCCGCGGa-----GGGGGCUgG- -5'
3617 3' -64.1 NC_001650.1 + 136153 0.75 0.186546
Target:  5'- cCAUGCgCCUGaaGGCGCC-CCCCgCGGCCu -3'
miRNA:   3'- -GUGCGaGGAC--CCGCGGaGGGG-GCUGG- -5'
3617 3' -64.1 NC_001650.1 + 134097 0.67 0.547892
Target:  5'- cCGCGgUCCcagGGGCgGCCUCUagaggCGACCg -3'
miRNA:   3'- -GUGCgAGGa--CCCG-CGGAGGgg---GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.