Results 41 - 60 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 124326 | 0.69 | 0.42444 |
Target: 5'- gGCGCgagUCCUccccaacacGGGCGCgaCCCCCGAa- -3' miRNA: 3'- gUGCG---AGGA---------CCCGCGgaGGGGGCUgg -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 122451 | 0.7 | 0.369232 |
Target: 5'- --aGCUCgUgGGGCaCCUcgCCCCCGGCCu -3' miRNA: 3'- gugCGAGgA-CCCGcGGA--GGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 122370 | 0.66 | 0.604376 |
Target: 5'- -uUGC-CCaGGGCGCCgccgucUCCCCCucCCg -3' miRNA: 3'- guGCGaGGaCCCGCGG------AGGGGGcuGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 121750 | 0.67 | 0.538623 |
Target: 5'- -cUGCUCCacuUGGGCGguccgcaggaCCUCCC-UGACCa -3' miRNA: 3'- guGCGAGG---ACCCGC----------GGAGGGgGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 121622 | 0.68 | 0.475484 |
Target: 5'- uCGCGUgcaggugCUUGaGGCGCgaggcggcgCCCCCGGCCg -3' miRNA: 3'- -GUGCGa------GGAC-CCGCGga-------GGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 120192 | 0.68 | 0.46676 |
Target: 5'- -uCGCcCCUGGGCGUcaccuccuugguCUucauacccuagCCCCCGGCCc -3' miRNA: 3'- guGCGaGGACCCGCG------------GA-----------GGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 119318 | 0.68 | 0.48429 |
Target: 5'- cCGCGCaUCUGGGCauGCCcgUCCCCGuCUa -3' miRNA: 3'- -GUGCGaGGACCCG--CGGa-GGGGGCuGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 117612 | 0.69 | 0.416253 |
Target: 5'- --aGCcCCUGGaCGCCUaugCCCgCCGACCg -3' miRNA: 3'- gugCGaGGACCcGCGGA---GGG-GGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 116973 | 0.7 | 0.392284 |
Target: 5'- gCAUGCUCa-GuGCGagUCCCCCGACCg -3' miRNA: 3'- -GUGCGAGgaCcCGCggAGGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 115011 | 0.66 | 0.585417 |
Target: 5'- -cCGC-CCUGGGCGUgUgcaggaUCCCCGcCCu -3' miRNA: 3'- guGCGaGGACCCGCGgA------GGGGGCuGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 111971 | 0.67 | 0.570332 |
Target: 5'- gCAUGCUCCUgagggagguuaagguGGGCaGC--CCCCUGACUa -3' miRNA: 3'- -GUGCGAGGA---------------CCCG-CGgaGGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 111342 | 0.67 | 0.566575 |
Target: 5'- aGgGC-CCgGGGUugcGCgUCCCCUGACCc -3' miRNA: 3'- gUgCGaGGaCCCG---CGgAGGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 108636 | 0.68 | 0.493173 |
Target: 5'- cCugGCcgaccaCCcGGccucGCGCCugUCCCCCGACCu -3' miRNA: 3'- -GugCGa-----GGaCC----CGCGG--AGGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 101012 | 0.66 | 0.613886 |
Target: 5'- uGCGCcgUCCUGGGCGaCUaucacaUCCCgGACg -3' miRNA: 3'- gUGCG--AGGACCCGCgGA------GGGGgCUGg -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 100063 | 0.68 | 0.478997 |
Target: 5'- --aGCUCCaaagugacccccgaGGcGCGCCUCuCCCCGcACCu -3' miRNA: 3'- gugCGAGGa-------------CC-CGCGGAG-GGGGC-UGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 94599 | 0.66 | 0.613886 |
Target: 5'- aGCGCgUCCaGGuaGCCcucgUCCCCCGcguCCa -3' miRNA: 3'- gUGCG-AGGaCCcgCGG----AGGGGGCu--GG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 91105 | 0.67 | 0.575979 |
Target: 5'- cCAUGCUgggCCUGcugagagaaGGCGCUcggagacugggUCCuCCCGGCCg -3' miRNA: 3'- -GUGCGA---GGAC---------CCGCGG-----------AGG-GGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 90305 | 0.75 | 0.195426 |
Target: 5'- aGCGcCUCgUGccagcacacGGCGCCUUCCCCGAUCa -3' miRNA: 3'- gUGC-GAGgAC---------CCGCGGAGGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 89895 | 0.69 | 0.432721 |
Target: 5'- gACGCggcCCUGa--GCCUCaCCCUGACCg -3' miRNA: 3'- gUGCGa--GGACccgCGGAG-GGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 88946 | 0.67 | 0.557211 |
Target: 5'- gCGCGaCUUCga-GgGCCUCCCgCCGGCCc -3' miRNA: 3'- -GUGC-GAGGaccCgCGGAGGG-GGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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