miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 3' -64.1 NC_001650.1 + 88942 0.67 0.557211
Target:  5'- cCACGCgcgaCUUcGaGG-GCCUCCCgCCGGCCc -3'
miRNA:   3'- -GUGCGa---GGA-C-CCgCGGAGGG-GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 88727 0.69 0.432721
Target:  5'- gGgGCUCCUcGGG-GaagCCCCCGGCCg -3'
miRNA:   3'- gUgCGAGGA-CCCgCggaGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 80903 0.71 0.339969
Target:  5'- -uCGCUCCccGGGU-CCguguagCCCCCGGCCa -3'
miRNA:   3'- guGCGAGGa-CCCGcGGa-----GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 80229 0.71 0.33292
Target:  5'- --aGCUCUcGGGUGCCgccuacUCCCCCGcuaGCCa -3'
miRNA:   3'- gugCGAGGaCCCGCGG------AGGGGGC---UGG- -5'
3617 3' -64.1 NC_001650.1 + 79093 0.69 0.416253
Target:  5'- cCugGCUCC-GGGCGCggCCgCUCGGCg -3'
miRNA:   3'- -GugCGAGGaCCCGCGgaGG-GGGCUGg -5'
3617 3' -64.1 NC_001650.1 + 78954 0.66 0.613886
Target:  5'- ---cCUCCUggGGGCGCagaugCCCCgCGGCCc -3'
miRNA:   3'- gugcGAGGA--CCCGCGga---GGGG-GCUGG- -5'
3617 3' -64.1 NC_001650.1 + 75294 0.7 0.361756
Target:  5'- gCGCGCgcaaaCCUGGaacaGCGCC-CCCCugCGGCCg -3'
miRNA:   3'- -GUGCGa----GGACC----CGCGGaGGGG--GCUGG- -5'
3617 3' -64.1 NC_001650.1 + 72994 0.66 0.623407
Target:  5'- gCGCGCUCCUGcgcccccacGCcCCUCuCCCUGAgCa -3'
miRNA:   3'- -GUGCGAGGACc--------CGcGGAG-GGGGCUgG- -5'
3617 3' -64.1 NC_001650.1 + 71392 0.73 0.240063
Target:  5'- gCGCGCUCCaGGcCGCCUUUCCCGagGCCc -3'
miRNA:   3'- -GUGCGAGGaCCcGCGGAGGGGGC--UGG- -5'
3617 3' -64.1 NC_001650.1 + 69981 0.67 0.575979
Target:  5'- gACGC-CCUGGaCGCCgCCCUgaGGCCc -3'
miRNA:   3'- gUGCGaGGACCcGCGGaGGGGg-CUGG- -5'
3617 3' -64.1 NC_001650.1 + 69479 0.68 0.49139
Target:  5'- uCGCGCUgCUGGGCcaccugaagagcccaGCgCcgccgcucuacucgCCCCCGGCCu -3'
miRNA:   3'- -GUGCGAgGACCCG---------------CG-Ga-------------GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 69298 0.66 0.585417
Target:  5'- gACGCUcgccucCCUGuGCGCgCUCCCCUacuGCCg -3'
miRNA:   3'- gUGCGA------GGACcCGCG-GAGGGGGc--UGG- -5'
3617 3' -64.1 NC_001650.1 + 69138 0.67 0.551614
Target:  5'- gGCuaUCUUGGcccucaggggcgcgaGCGCCUCCagguCCGGCCa -3'
miRNA:   3'- gUGcgAGGACC---------------CGCGGAGGg---GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 69023 0.65 0.639602
Target:  5'- cCAUGCUCacgaGCGCCUgguucucguggaagCCCUCGGCCu -3'
miRNA:   3'- -GUGCGAGgaccCGCGGA--------------GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 68671 0.69 0.416253
Target:  5'- --aGCUgucugCCaggGGGCGCCgucucUCCCCCGGCUc -3'
miRNA:   3'- gugCGA-----GGa--CCCGCGG-----AGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 68215 0.66 0.636744
Target:  5'- aGCgGUUCCUGGagugccuguacgaguGCGCCUCCUUCGGg- -3'
miRNA:   3'- gUG-CGAGGACC---------------CGCGGAGGGGGCUgg -5'
3617 3' -64.1 NC_001650.1 + 67733 0.68 0.492281
Target:  5'- -cCGCUCg-GGGCauccgucGCCUCCCCCu-CCa -3'
miRNA:   3'- guGCGAGgaCCCG-------CGGAGGGGGcuGG- -5'
3617 3' -64.1 NC_001650.1 + 67115 0.66 0.594885
Target:  5'- cCAUGCUCCccGGCcCCaugCuCCCCGGCCc -3'
miRNA:   3'- -GUGCGAGGacCCGcGGa--G-GGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 67073 0.68 0.48429
Target:  5'- -cCGC-CCccGGCGCCUCCCgCGGCg -3'
miRNA:   3'- guGCGaGGacCCGCGGAGGGgGCUGg -5'
3617 3' -64.1 NC_001650.1 + 66941 0.67 0.575979
Target:  5'- aUAgGCUCCUGcGGCGCCgcgagCUacaacaccguCCUGAUCa -3'
miRNA:   3'- -GUgCGAGGAC-CCGCGGa----GG----------GGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.