Results 81 - 100 of 120 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 63090 | 0.7 | 0.361756 |
Target: 5'- uCGCGCcCCcGGGUGCUccggagcCCCCUGGCCu -3' miRNA: 3'- -GUGCGaGGaCCCGCGGa------GGGGGCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 62610 | 0.66 | 0.585417 |
Target: 5'- cCugGg-CCUGGGUuCCUCCCCa-ACCa -3' miRNA: 3'- -GugCgaGGACCCGcGGAGGGGgcUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 62339 | 0.72 | 0.305807 |
Target: 5'- -gUGCUCCaGGGaacaGCCUCCUCCGAg- -3' miRNA: 3'- guGCGAGGaCCCg---CGGAGGGGGCUgg -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 61089 | 0.7 | 0.376812 |
Target: 5'- gGgGCUCCUGgaGGUGCUggCCUCGGCCa -3' miRNA: 3'- gUgCGAGGAC--CCGCGGagGGGGCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 60048 | 0.71 | 0.354387 |
Target: 5'- ----aUCCUGGGCuGCCUgCCCgUGACCa -3' miRNA: 3'- gugcgAGGACCCG-CGGA-GGGgGCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 59973 | 0.75 | 0.195426 |
Target: 5'- aGCGUgUCCgugggGGGCGCCUCgCCCCcgggGGCCa -3' miRNA: 3'- gUGCG-AGGa----CCCGCGGAG-GGGG----CUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 59557 | 0.72 | 0.312423 |
Target: 5'- uGCGC-CCUGcGGCGCucCUCCCCCaGCa -3' miRNA: 3'- gUGCGaGGAC-CCGCG--GAGGGGGcUGg -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 59400 | 0.68 | 0.464158 |
Target: 5'- gCGCGCUgCUGGaGgGCCUcaccaacuacgugaCCCaCCGGCUg -3' miRNA: 3'- -GUGCGAgGACC-CgCGGA--------------GGG-GGCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 59055 | 0.66 | 0.594885 |
Target: 5'- cCGCGgaCgUGGGggcucaucUGCCUCUCCCgGGCCc -3' miRNA: 3'- -GUGCgaGgACCC--------GCGGAGGGGG-CUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 58159 | 0.77 | 0.140421 |
Target: 5'- cCGCGcCUCCcgcccagcugaGGGUGCCgCCCCCGGCCg -3' miRNA: 3'- -GUGC-GAGGa----------CCCGCGGaGGGGGCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 53676 | 0.67 | 0.564699 |
Target: 5'- uGCGCUCUgauuggccgagaGGGCcaGCCggCUCUCGACCa -3' miRNA: 3'- gUGCGAGGa-----------CCCG--CGGa-GGGGGCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 52861 | 0.72 | 0.280418 |
Target: 5'- gCGCGcCUCCUcucguagcaggaGGGCGCgCUCUCCCGAa- -3' miRNA: 3'- -GUGC-GAGGA------------CCCGCG-GAGGGGGCUgg -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 52792 | 0.71 | 0.319148 |
Target: 5'- --aGCUCCcGGGCgaaGCCgacgacCCCCCGACUc -3' miRNA: 3'- gugCGAGGaCCCG---CGGa-----GGGGGCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 52719 | 0.68 | 0.475484 |
Target: 5'- gACGgUCCaGGGgGCCacgguggcggUCuCCCUGACCa -3' miRNA: 3'- gUGCgAGGaCCCgCGG----------AG-GGGGCUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 50509 | 0.75 | 0.199541 |
Target: 5'- gCGCGCU-UUGGGCGCucgccguCUCCCCCGccGCCg -3' miRNA: 3'- -GUGCGAgGACCCGCG-------GAGGGGGC--UGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 50472 | 0.66 | 0.585417 |
Target: 5'- -cCGCUCCcGGGCGCagagaggcgCCCCUGuCg -3' miRNA: 3'- guGCGAGGaCCCGCGga-------GGGGGCuGg -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 50253 | 0.67 | 0.566575 |
Target: 5'- uGCGCgacagGGGCGCCUCUCUgCGcCCg -3' miRNA: 3'- gUGCGagga-CCCGCGGAGGGG-GCuGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 48266 | 0.68 | 0.511157 |
Target: 5'- cCACGUUCa-GGGCGCC-CCCCagcagCGAgCa -3' miRNA: 3'- -GUGCGAGgaCCCGCGGaGGGG-----GCUgG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 43717 | 0.77 | 0.150866 |
Target: 5'- gCugGCUCCUGGcGCcaGCCUCCCUC-ACCc -3' miRNA: 3'- -GugCGAGGACC-CG--CGGAGGGGGcUGG- -5' |
|||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 37461 | 0.69 | 0.42444 |
Target: 5'- aCugGCaUCggGGGCGCaCUCCaCCCG-CCu -3' miRNA: 3'- -GugCG-AGgaCCCGCG-GAGG-GGGCuGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home