miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 3' -64.1 NC_001650.1 + 108636 0.68 0.493173
Target:  5'- cCugGCcgaccaCCcGGccucGCGCCugUCCCCCGACCu -3'
miRNA:   3'- -GugCGa-----GGaCC----CGCGG--AGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 100063 0.68 0.478997
Target:  5'- --aGCUCCaaagugacccccgaGGcGCGCCUCuCCCCGcACCu -3'
miRNA:   3'- gugCGAGGa-------------CC-CGCGGAG-GGGGC-UGG- -5'
3617 3' -64.1 NC_001650.1 + 141872 0.7 0.364734
Target:  5'- cCACGCUCgCUccacacggugacuucGGGCGCgcuCUCCCCCuaGGCUa -3'
miRNA:   3'- -GUGCGAG-GA---------------CCCGCG---GAGGGGG--CUGG- -5'
3617 3' -64.1 NC_001650.1 + 75294 0.7 0.361756
Target:  5'- gCGCGCgcaaaCCUGGaacaGCGCC-CCCCugCGGCCg -3'
miRNA:   3'- -GUGCGa----GGACC----CGCGGaGGGG--GCUGG- -5'
3617 3' -64.1 NC_001650.1 + 24519 0.7 0.361756
Target:  5'- -cUGCUCCUGcccGGCuGCCccuacCCCCUGGCCg -3'
miRNA:   3'- guGCGAGGAC---CCG-CGGa----GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 142761 0.71 0.346404
Target:  5'- gGCGguCUCCaGGGCGUUUCCCCagggcggCGGCCg -3'
miRNA:   3'- gUGC--GAGGaCCCGCGGAGGGG-------GCUGG- -5'
3617 3' -64.1 NC_001650.1 + 52861 0.72 0.280418
Target:  5'- gCGCGcCUCCUcucguagcaggaGGGCGCgCUCUCCCGAa- -3'
miRNA:   3'- -GUGC-GAGGA------------CCCGCG-GAGGGGGCUgg -5'
3617 3' -64.1 NC_001650.1 + 71392 0.73 0.240063
Target:  5'- gCGCGCUCCaGGcCGCCUUUCCCGagGCCc -3'
miRNA:   3'- -GUGCGAGGaCCcGCGGAGGGGGC--UGG- -5'
3617 3' -64.1 NC_001650.1 + 147792 0.75 0.200003
Target:  5'- aCACGCUCCUGGaGaGCCUgCCgCGACg -3'
miRNA:   3'- -GUGCGAGGACC-CgCGGAgGGgGCUGg -5'
3617 3' -64.1 NC_001650.1 + 136153 0.75 0.186546
Target:  5'- cCAUGCgCCUGaaGGCGCC-CCCCgCGGCCu -3'
miRNA:   3'- -GUGCGaGGAC--CCGCGGaGGGG-GCUGG- -5'
3617 3' -64.1 NC_001650.1 + 117612 0.69 0.416253
Target:  5'- --aGCcCCUGGaCGCCUaugCCCgCCGACCg -3'
miRNA:   3'- gugCGaGGACCcGCGGA---GGG-GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 68671 0.69 0.416253
Target:  5'- --aGCUgucugCCaggGGGCGCCgucucUCCCCCGGCUc -3'
miRNA:   3'- gugCGA-----GGa--CCCGCGG-----AGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 52719 0.68 0.475484
Target:  5'- gACGgUCCaGGGgGCCacgguggcggUCuCCCUGACCa -3'
miRNA:   3'- gUGCgAGGaCCCgCGG----------AG-GGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 120192 0.68 0.46676
Target:  5'- -uCGCcCCUGGGCGUcaccuccuugguCUucauacccuagCCCCCGGCCc -3'
miRNA:   3'- guGCGaGGACCCGCG------------GA-----------GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 59400 0.68 0.464158
Target:  5'- gCGCGCUgCUGGaGgGCCUcaccaacuacgugaCCCaCCGGCUg -3'
miRNA:   3'- -GUGCGAgGACC-CgCGGA--------------GGG-GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 133912 0.68 0.463293
Target:  5'- gGCGC-CCagaguacagcuggGGGCGCC-CCCCaGACCc -3'
miRNA:   3'- gUGCGaGGa------------CCCGCGGaGGGGgCUGG- -5'
3617 3' -64.1 NC_001650.1 + 89895 0.69 0.432721
Target:  5'- gACGCggcCCUGa--GCCUCaCCCUGACCg -3'
miRNA:   3'- gUGCGa--GGACccgCGGAG-GGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 88727 0.69 0.432721
Target:  5'- gGgGCUCCUcGGG-GaagCCCCCGGCCg -3'
miRNA:   3'- gUgCGAGGA-CCCgCggaGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 124326 0.69 0.42444
Target:  5'- gGCGCgagUCCUccccaacacGGGCGCgaCCCCCGAa- -3'
miRNA:   3'- gUGCG---AGGA---------CCCGCGgaGGGGGCUgg -5'
3617 3' -64.1 NC_001650.1 + 79093 0.69 0.416253
Target:  5'- cCugGCUCC-GGGCGCggCCgCUCGGCg -3'
miRNA:   3'- -GugCGAGGaCCCGCGgaGG-GGGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.