Results 101 - 120 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3617 | 3' | -64.1 | NC_001650.1 | + | 124580 | 0.77 | 0.13709 |
Target: 5'- -uCGCUCaUGGGCGCgaCCCCCGGCg -3' miRNA: 3'- guGCGAGgACCCGCGgaGGGGGCUGg -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 133509 | 0.71 | 0.339969 |
Target: 5'- gGCGcCUCCUGGGCagcccCCUCCCCuucucuCGGCg -3' miRNA: 3'- gUGC-GAGGACCCGc----GGAGGGG------GCUGg -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 165683 | 0.71 | 0.339969 |
Target: 5'- -cCGC-CCcGGGUGCUUCCUCgGGCCg -3' miRNA: 3'- guGCGaGGaCCCGCGGAGGGGgCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 119318 | 0.68 | 0.48429 |
Target: 5'- cCGCGCaUCUGGGCauGCCcgUCCCCGuCUa -3' miRNA: 3'- -GUGCGaGGACCCG--CGGa-GGGGGCuGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 143847 | 0.68 | 0.48429 |
Target: 5'- uCGCGCgUCUUGcGGgGCCUCUCgCGGuCCa -3' miRNA: 3'- -GUGCG-AGGAC-CCgCGGAGGGgGCU-GG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 121622 | 0.68 | 0.475484 |
Target: 5'- uCGCGUgcaggugCUUGaGGCGCgaggcggcgCCCCCGGCCg -3' miRNA: 3'- -GUGCGa------GGAC-CCGCGga-------GGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 24568 | 0.68 | 0.474609 |
Target: 5'- uGCGCaCCgagUGGGaccuccaCGCCUCCCCC-ACCu -3' miRNA: 3'- gUGCGaGG---ACCC-------GCGGAGGGGGcUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 34662 | 0.69 | 0.449563 |
Target: 5'- --gGCUCCUGGGcCGCCcucuccaCCCCGGg- -3' miRNA: 3'- gugCGAGGACCC-GCGGag-----GGGGCUgg -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 127777 | 0.69 | 0.432721 |
Target: 5'- cCugGC-CCUGGGCggucGCC-CCCCUcGCCc -3' miRNA: 3'- -GugCGaGGACCCG----CGGaGGGGGcUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 27018 | 0.69 | 0.42444 |
Target: 5'- gGCcaaCUCgaagGGGCGCgcggCUCCCCCGGCCc -3' miRNA: 3'- gUGc--GAGga--CCCGCG----GAGGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 37461 | 0.69 | 0.42444 |
Target: 5'- aCugGCaUCggGGGCGCaCUCCaCCCG-CCu -3' miRNA: 3'- -GugCG-AGgaCCCGCG-GAGG-GGGCuGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 129536 | 0.69 | 0.416253 |
Target: 5'- -cUGCUCCUGGGCcgcguaguCCUUCCUCaGGCCc -3' miRNA: 3'- guGCGAGGACCCGc-------GGAGGGGG-CUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 22044 | 0.69 | 0.41544 |
Target: 5'- cCGCGaggaUCUUGGGgaugggggugguCGCCUCCCCCuccccggGGCCu -3' miRNA: 3'- -GUGCg---AGGACCC------------GCGGAGGGGG-------CUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 116973 | 0.7 | 0.392284 |
Target: 5'- gCAUGCUCa-GuGCGagUCCCCCGACCg -3' miRNA: 3'- -GUGCGAGgaCcCGCggAGGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 136841 | 0.7 | 0.392284 |
Target: 5'- -cCGCggagCCUcaGGGCGCCccgacgCCCCCGGgCg -3' miRNA: 3'- guGCGa---GGA--CCCGCGGa-----GGGGGCUgG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 61089 | 0.7 | 0.376812 |
Target: 5'- gGgGCUCCUGgaGGUGCUggCCUCGGCCa -3' miRNA: 3'- gUgCGAGGAC--CCGCGGagGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 122451 | 0.7 | 0.369232 |
Target: 5'- --aGCUCgUgGGGCaCCUcgCCCCCGGCCu -3' miRNA: 3'- gugCGAGgA-CCCGcGGA--GGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 63090 | 0.7 | 0.361756 |
Target: 5'- uCGCGCcCCcGGGUGCUccggagcCCCCUGGCCu -3' miRNA: 3'- -GUGCGaGGaCCCGCGGa------GGGGGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 60048 | 0.71 | 0.354387 |
Target: 5'- ----aUCCUGGGCuGCCUgCCCgUGACCa -3' miRNA: 3'- gugcgAGGACCCG-CGGA-GGGgGCUGG- -5' |
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3617 | 3' | -64.1 | NC_001650.1 | + | 36236 | 1.09 | 0.000748 |
Target: 5'- gCACGCUCCUGGGCGCCUCCCCCGACCc -3' miRNA: 3'- -GUGCGAGGACCCGCGGAGGGGGCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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