miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 3' -64.1 NC_001650.1 + 132765 0.67 0.566575
Target:  5'- --aGCUCCaccggGGGCGCgUCgCCCGGg- -3'
miRNA:   3'- gugCGAGGa----CCCGCGgAGgGGGCUgg -5'
3617 3' -64.1 NC_001650.1 + 34662 0.69 0.449563
Target:  5'- --gGCUCCUGGGcCGCCcucuccaCCCCGGg- -3'
miRNA:   3'- gugCGAGGACCC-GCGGag-----GGGGCUgg -5'
3617 3' -64.1 NC_001650.1 + 80903 0.71 0.339969
Target:  5'- -uCGCUCCccGGGU-CCguguagCCCCCGGCCa -3'
miRNA:   3'- guGCGAGGa-CCCGcGGa-----GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 30623 0.67 0.557211
Target:  5'- aGCGcCUCCaGGGCGcCCUCUgCgGGCa -3'
miRNA:   3'- gUGC-GAGGaCCCGC-GGAGGgGgCUGg -5'
3617 3' -64.1 NC_001650.1 + 80229 0.71 0.33292
Target:  5'- --aGCUCUcGGGUGCCgccuacUCCCCCGcuaGCCa -3'
miRNA:   3'- gugCGAGGaCCCGCGG------AGGGGGC---UGG- -5'
3617 3' -64.1 NC_001650.1 + 115011 0.66 0.585417
Target:  5'- -cCGC-CCUGGGCGUgUgcaggaUCCCCGcCCu -3'
miRNA:   3'- guGCGaGGACCCGCGgA------GGGGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 133509 0.71 0.339969
Target:  5'- gGCGcCUCCUGGGCagcccCCUCCCCuucucuCGGCg -3'
miRNA:   3'- gUGC-GAGGACCCGc----GGAGGGG------GCUGg -5'
3617 3' -64.1 NC_001650.1 + 50472 0.66 0.585417
Target:  5'- -cCGCUCCcGGGCGCagagaggcgCCCCUGuCg -3'
miRNA:   3'- guGCGAGGaCCCGCGga-------GGGGGCuGg -5'
3617 3' -64.1 NC_001650.1 + 62610 0.66 0.585417
Target:  5'- cCugGg-CCUGGGUuCCUCCCCa-ACCa -3'
miRNA:   3'- -GugCgaGGACCCGcGGAGGGGgcUGG- -5'
3617 3' -64.1 NC_001650.1 + 13687 0.66 0.585417
Target:  5'- --aGgUCaggGGGCGUCUCCaugauguaCCCGGCCa -3'
miRNA:   3'- gugCgAGga-CCCGCGGAGG--------GGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 180394 0.66 0.585417
Target:  5'- --aGgUCaggGGGCGUCUCCaugauguaCCCGGCCa -3'
miRNA:   3'- gugCgAGga-CCCGCGGAGG--------GGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 66941 0.67 0.575979
Target:  5'- aUAgGCUCCUGcGGCGCCgcgagCUacaacaccguCCUGAUCa -3'
miRNA:   3'- -GUgCGAGGAC-CCGCGGa----GG----------GGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 69981 0.67 0.575979
Target:  5'- gACGC-CCUGGaCGCCgCCCUgaGGCCc -3'
miRNA:   3'- gUGCGaGGACCcGCGGaGGGGg-CUGG- -5'
3617 3' -64.1 NC_001650.1 + 124748 0.67 0.538623
Target:  5'- gGCGCUCCcucGGCGCCgaaCUCGACa -3'
miRNA:   3'- gUGCGAGGac-CCGCGGaggGGGCUGg -5'
3617 3' -64.1 NC_001650.1 + 36643 0.68 0.520251
Target:  5'- gACGUccUCCUucuuGGCGCCcacgcacUCCCCGGCCa -3'
miRNA:   3'- gUGCG--AGGAc---CCGCGGa------GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 67073 0.68 0.48429
Target:  5'- -cCGC-CCccGGCGCCUCCCgCGGCg -3'
miRNA:   3'- guGCGaGGacCCGCGGAGGGgGCUGg -5'
3617 3' -64.1 NC_001650.1 + 121622 0.68 0.475484
Target:  5'- uCGCGUgcaggugCUUGaGGCGCgaggcggcgCCCCCGGCCg -3'
miRNA:   3'- -GUGCGa------GGAC-CCGCGga-------GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 37461 0.69 0.42444
Target:  5'- aCugGCaUCggGGGCGCaCUCCaCCCG-CCu -3'
miRNA:   3'- -GugCG-AGgaCCCGCG-GAGG-GGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 116973 0.7 0.392284
Target:  5'- gCAUGCUCa-GuGCGagUCCCCCGACCg -3'
miRNA:   3'- -GUGCGAGgaCcCGCggAGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 63090 0.7 0.361756
Target:  5'- uCGCGCcCCcGGGUGCUccggagcCCCCUGGCCu -3'
miRNA:   3'- -GUGCGaGGaCCCGCGGa------GGGGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.