miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 3' -64.1 NC_001650.1 + 48266 0.68 0.511157
Target:  5'- cCACGUUCa-GGGCGCC-CCCCagcagCGAgCa -3'
miRNA:   3'- -GUGCGAGgaCCCGCGGaGGGG-----GCUgG- -5'
3617 3' -64.1 NC_001650.1 + 36643 0.68 0.520251
Target:  5'- gACGUccUCCUucuuGGCGCCcacgcacUCCCCGGCCa -3'
miRNA:   3'- gUGCG--AGGAc---CCGCGGa------GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 121750 0.67 0.538623
Target:  5'- -cUGCUCCacuUGGGCGguccgcaggaCCUCCC-UGACCa -3'
miRNA:   3'- guGCGAGG---ACCCGC----------GGAGGGgGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 124748 0.67 0.538623
Target:  5'- gGCGCUCCcucGGCGCCgaaCUCGACa -3'
miRNA:   3'- gUGCGAGGac-CCGCGGaggGGGCUGg -5'
3617 3' -64.1 NC_001650.1 + 30623 0.67 0.557211
Target:  5'- aGCGcCUCCaGGGCGcCCUCUgCgGGCa -3'
miRNA:   3'- gUGC-GAGGaCCCGC-GGAGGgGgCUGg -5'
3617 3' -64.1 NC_001650.1 + 132765 0.67 0.566575
Target:  5'- --aGCUCCaccggGGGCGCgUCgCCCGGg- -3'
miRNA:   3'- gugCGAGGa----CCCGCGgAGgGGGCUgg -5'
3617 3' -64.1 NC_001650.1 + 69981 0.67 0.575979
Target:  5'- gACGC-CCUGGaCGCCgCCCUgaGGCCc -3'
miRNA:   3'- gUGCGaGGACCcGCGGaGGGGg-CUGG- -5'
3617 3' -64.1 NC_001650.1 + 133535 0.67 0.575979
Target:  5'- gAUGCUgCUcGGGCGUC-CCCUCG-CCc -3'
miRNA:   3'- gUGCGAgGA-CCCGCGGaGGGGGCuGG- -5'
3617 3' -64.1 NC_001650.1 + 58159 0.77 0.140421
Target:  5'- cCGCGcCUCCcgcccagcugaGGGUGCCgCCCCCGGCCg -3'
miRNA:   3'- -GUGC-GAGGa----------CCCGCGGaGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 13687 0.66 0.585417
Target:  5'- --aGgUCaggGGGCGUCUCCaugauguaCCCGGCCa -3'
miRNA:   3'- gugCgAGga-CCCGCGGAGG--------GGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 36026 0.66 0.632933
Target:  5'- --aGUcCCUGGccGCGCC-CCCCUGGCg -3'
miRNA:   3'- gugCGaGGACC--CGCGGaGGGGGCUGg -5'
3617 3' -64.1 NC_001650.1 + 67733 0.68 0.492281
Target:  5'- -cCGCUCg-GGGCauccgucGCCUCCCCCu-CCa -3'
miRNA:   3'- guGCGAGgaCCCG-------CGGAGGGGGcuGG- -5'
3617 3' -64.1 NC_001650.1 + 69138 0.67 0.551614
Target:  5'- gGCuaUCUUGGcccucaggggcgcgaGCGCCUCCagguCCGGCCa -3'
miRNA:   3'- gUGcgAGGACC---------------CGCGGAGGg---GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 141175 0.67 0.557211
Target:  5'- gGCGCgaacUCUGGGUGa---CCCCGGCCc -3'
miRNA:   3'- gUGCGa---GGACCCGCggagGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 88942 0.67 0.557211
Target:  5'- cCACGCgcgaCUUcGaGG-GCCUCCCgCCGGCCc -3'
miRNA:   3'- -GUGCGa---GGA-C-CCgCGGAGGG-GGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 24519 0.7 0.361756
Target:  5'- -cUGCUCCUGcccGGCuGCCccuacCCCCUGGCCg -3'
miRNA:   3'- guGCGAGGAC---CCG-CGGa----GGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 132616 0.67 0.529408
Target:  5'- gGCGCUggcccccaaCCUGcaGGCgGCCUCCCCCauccCCa -3'
miRNA:   3'- gUGCGA---------GGAC--CCG-CGGAGGGGGcu--GG- -5'
3617 3' -64.1 NC_001650.1 + 89895 0.69 0.432721
Target:  5'- gACGCggcCCUGa--GCCUCaCCCUGACCg -3'
miRNA:   3'- gUGCGa--GGACccgCGGAG-GGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 88727 0.69 0.432721
Target:  5'- gGgGCUCCUcGGG-GaagCCCCCGGCCg -3'
miRNA:   3'- gUgCGAGGA-CCCgCggaGGGGGCUGG- -5'
3617 3' -64.1 NC_001650.1 + 53676 0.67 0.564699
Target:  5'- uGCGCUCUgauuggccgagaGGGCcaGCCggCUCUCGACCa -3'
miRNA:   3'- gUGCGAGGa-----------CCCG--CGGa-GGGGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.