miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3617 5' -54.1 NC_001650.1 + 165414 0.66 0.954085
Target:  5'- aAGAUgAUGCgguuGGGAGGUCaGCAGGu- -3'
miRNA:   3'- gUCUAgUGCG----UCCUCUAGaCGUCCua -5'
3617 5' -54.1 NC_001650.1 + 47503 0.66 0.945594
Target:  5'- -uGA-CACGguGGGGGUUUGgGGGAc -3'
miRNA:   3'- guCUaGUGCguCCUCUAGACgUCCUa -5'
3617 5' -54.1 NC_001650.1 + 117841 0.67 0.925687
Target:  5'- aGGGUCAUGCAGGccgagcGGUCgGCGGGc- -3'
miRNA:   3'- gUCUAGUGCGUCCu-----CUAGaCGUCCua -5'
3617 5' -54.1 NC_001650.1 + 180485 0.68 0.908161
Target:  5'- ----aCugGCAGGAGGagcCUGCGGGGg -3'
miRNA:   3'- gucuaGugCGUCCUCUa--GACGUCCUa -5'
3617 5' -54.1 NC_001650.1 + 13778 0.68 0.908161
Target:  5'- ----aCugGCAGGAGGagcCUGCGGGGg -3'
miRNA:   3'- gucuaGugCGUCCUCUa--GACGUCCUa -5'
3617 5' -54.1 NC_001650.1 + 53266 0.69 0.874122
Target:  5'- gGGGUCACG-GGGAGGUCgagGcCGGGGUc -3'
miRNA:   3'- gUCUAGUGCgUCCUCUAGa--C-GUCCUA- -5'
3617 5' -54.1 NC_001650.1 + 74174 0.69 0.866622
Target:  5'- gCAGGUCGCcauGCAGGuAGA-CaGCAGGAUa -3'
miRNA:   3'- -GUCUAGUG---CGUCC-UCUaGaCGUCCUA- -5'
3617 5' -54.1 NC_001650.1 + 156199 0.69 0.842837
Target:  5'- -uGGUCACGCAGGGGggCUcGguGGu- -3'
miRNA:   3'- guCUAGUGCGUCCUCuaGA-CguCCua -5'
3617 5' -54.1 NC_001650.1 + 48200 0.7 0.817268
Target:  5'- -cGGUCaACGCccuGGAGAUgaGCAGGAa -3'
miRNA:   3'- guCUAG-UGCGu--CCUCUAgaCGUCCUa -5'
3617 5' -54.1 NC_001650.1 + 98830 0.7 0.808386
Target:  5'- cCAGcaaaagugCAgGCAGGAGGUCaGCAGGGa -3'
miRNA:   3'- -GUCua------GUgCGUCCUCUAGaCGUCCUa -5'
3617 5' -54.1 NC_001650.1 + 98841 0.7 0.808386
Target:  5'- ----gCAgGCAGGAGGUCaGCAGGGa -3'
miRNA:   3'- gucuaGUgCGUCCUCUAGaCGUCCUa -5'
3617 5' -54.1 NC_001650.1 + 23932 0.7 0.790133
Target:  5'- aGGA-CGCGCAGGAGGUCacguuaCAGGAg -3'
miRNA:   3'- gUCUaGUGCGUCCUCUAGac----GUCCUa -5'
3617 5' -54.1 NC_001650.1 + 103468 0.71 0.761671
Target:  5'- cCAGcAUCACGCAGGAGg---GCAGGu- -3'
miRNA:   3'- -GUC-UAGUGCGUCCUCuagaCGUCCua -5'
3617 5' -54.1 NC_001650.1 + 43071 0.71 0.761671
Target:  5'- gGGGUCGCGgGGGAGGUCU--AGGGUc -3'
miRNA:   3'- gUCUAGUGCgUCCUCUAGAcgUCCUA- -5'
3617 5' -54.1 NC_001650.1 + 46456 0.73 0.650137
Target:  5'- -cGGUCGCGCGGGGGcGUgUGcCAGGAUg -3'
miRNA:   3'- guCUAGUGCGUCCUC-UAgAC-GUCCUA- -5'
3617 5' -54.1 NC_001650.1 + 24303 0.74 0.597059
Target:  5'- aGGAUCACGCGGGGGGaucaggUCUuauuggagugcgaGCAGGAg -3'
miRNA:   3'- gUCUAGUGCGUCCUCU------AGA-------------CGUCCUa -5'
3617 5' -54.1 NC_001650.1 + 36202 1.05 0.007792
Target:  5'- cCAGAUCACGCAGGAGAUCUGCAGGAUc -3'
miRNA:   3'- -GUCUAGUGCGUCCUCUAGACGUCCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.