miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3618 3' -49.1 NC_001650.1 + 137014 0.65 0.999517
Target:  5'- --aUGGAGAGGcaccucccaaacuGGG-AGuGCAGGUCCa -3'
miRNA:   3'- accACUUUUUC-------------UCCaUCuCGUCCAGG- -5'
3618 3' -49.1 NC_001650.1 + 89854 0.66 0.999412
Target:  5'- -cGUGcccGGAGAGGcGGuGCGGGUCg -3'
miRNA:   3'- acCACuu-UUUCUCCaUCuCGUCCAGg -5'
3618 3' -49.1 NC_001650.1 + 84933 0.66 0.999412
Target:  5'- gGGcGAGGGAGAuGGggAGAGCGauGUCCa -3'
miRNA:   3'- aCCaCUUUUUCU-CCa-UCUCGUc-CAGG- -5'
3618 3' -49.1 NC_001650.1 + 67302 0.66 0.999412
Target:  5'- gGGaacuUGGAGAAGAGcaGGGGCAGGg-- -3'
miRNA:   3'- aCC----ACUUUUUCUCcaUCUCGUCCagg -5'
3618 3' -49.1 NC_001650.1 + 48854 0.66 0.999412
Target:  5'- aGGUGcgcGAAgcAGGAGGcGGAGCcGGUUg -3'
miRNA:   3'- aCCAC---UUU--UUCUCCaUCUCGuCCAGg -5'
3618 3' -49.1 NC_001650.1 + 88662 0.66 0.999399
Target:  5'- gGGUGAcggggcaGAGGGAGGggauggaGGAGUAGG-Cg -3'
miRNA:   3'- aCCACU-------UUUUCUCCa------UCUCGUCCaGg -5'
3618 3' -49.1 NC_001650.1 + 80932 0.66 0.999373
Target:  5'- gGGUGcacaggcAGGuGGUGGAGacgccgucgcucccCGGGUCCg -3'
miRNA:   3'- aCCACuuu----UUCuCCAUCUC--------------GUCCAGG- -5'
3618 3' -49.1 NC_001650.1 + 5796 0.66 0.999273
Target:  5'- gUGGUGA----GGGGUAGAGUgagggGGGaUCUu -3'
miRNA:   3'- -ACCACUuuuuCUCCAUCUCG-----UCC-AGG- -5'
3618 3' -49.1 NC_001650.1 + 30376 0.66 0.999273
Target:  5'- gGGUGuucuGGAGGAGGUgcuGGAGCucgAGGg-- -3'
miRNA:   3'- aCCACu---UUUUCUCCA---UCUCG---UCCagg -5'
3618 3' -49.1 NC_001650.1 + 106842 0.66 0.999273
Target:  5'- cGGUGc---AGGGGUGGGcGCugGGGUCg -3'
miRNA:   3'- aCCACuuuuUCUCCAUCU-CG--UCCAGg -5'
3618 3' -49.1 NC_001650.1 + 113132 0.66 0.999107
Target:  5'- gUGGUGGGAcaGAGuGGUGGgacagaguGGUGGG-CCa -3'
miRNA:   3'- -ACCACUUU--UUCuCCAUC--------UCGUCCaGG- -5'
3618 3' -49.1 NC_001650.1 + 79673 0.66 0.999107
Target:  5'- aGGUGGGAGAGAGcugcgccuGGGuCAGGgCCu -3'
miRNA:   3'- aCCACUUUUUCUCcau-----CUC-GUCCaGG- -5'
3618 3' -49.1 NC_001650.1 + 88834 0.66 0.999107
Target:  5'- cGGUGAAAcuGAGGccGGuGCuGG-CCg -3'
miRNA:   3'- aCCACUUUuuCUCCa-UCuCGuCCaGG- -5'
3618 3' -49.1 NC_001650.1 + 164642 0.66 0.999107
Target:  5'- gGGUGAGccgGGGGucucuGGUAGAGCAcGcCCc -3'
miRNA:   3'- aCCACUU---UUUCu----CCAUCUCGUcCaGG- -5'
3618 3' -49.1 NC_001650.1 + 37621 0.66 0.999107
Target:  5'- gGGUGGA--GGAGGUGugcGcGCGGGggCCc -3'
miRNA:   3'- aCCACUUuuUCUCCAU---CuCGUCCa-GG- -5'
3618 3' -49.1 NC_001650.1 + 156316 0.66 0.999107
Target:  5'- cGGUGcu--GGAGGUGccccuGGGCaaccuggccgGGGUCCu -3'
miRNA:   3'- aCCACuuuuUCUCCAU-----CUCG----------UCCAGG- -5'
3618 3' -49.1 NC_001650.1 + 136201 0.66 0.999107
Target:  5'- uUGG-GAuGAAGAGaaAGAGCAGGaaCCa -3'
miRNA:   3'- -ACCaCUuUUUCUCcaUCUCGUCCa-GG- -5'
3618 3' -49.1 NC_001650.1 + 152164 0.66 0.998909
Target:  5'- cUGGUGAuuu--GGGUGGccaucuuacuugGGguGGUCCu -3'
miRNA:   3'- -ACCACUuuuucUCCAUC------------UCguCCAGG- -5'
3618 3' -49.1 NC_001650.1 + 131094 0.66 0.998909
Target:  5'- aGG-GGAGAGGGGGgaggcGAGgGGaGUCCc -3'
miRNA:   3'- aCCaCUUUUUCUCCau---CUCgUC-CAGG- -5'
3618 3' -49.1 NC_001650.1 + 4613 0.67 0.998675
Target:  5'- cGGccaaUGggGGAcGGGGUGGA--GGGUCCc -3'
miRNA:   3'- aCC----ACuuUUU-CUCCAUCUcgUCCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.