miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3618 3' -49.1 NC_001650.1 + 36327 1.15 0.007181
Target:  5'- aUGGUGAAAAAGAGGUAGAGCAGGUCCa -3'
miRNA:   3'- -ACCACUUUUUCUCCAUCUCGUCCAGG- -5'
3618 3' -49.1 NC_001650.1 + 100726 0.82 0.541545
Target:  5'- uUGGaGAGGGAGGGGUGGuGCcggGGGUCCg -3'
miRNA:   3'- -ACCaCUUUUUCUCCAUCuCG---UCCAGG- -5'
3618 3' -49.1 NC_001650.1 + 151017 0.81 0.593918
Target:  5'- aGGUgGAGGAGGAGGUGGAGguGGa-- -3'
miRNA:   3'- aCCA-CUUUUUCUCCAUCUCguCCagg -5'
3618 3' -49.1 NC_001650.1 + 84969 0.8 0.647031
Target:  5'- aGGUGAGGAGGAGGgcGAugGCGGGggcgaggCCg -3'
miRNA:   3'- aCCACUUUUUCUCCauCU--CGUCCa------GG- -5'
3618 3' -49.1 NC_001650.1 + 130759 0.77 0.770834
Target:  5'- aGGUGGAGAAGAGGcUGGGGCcccuGGUg- -3'
miRNA:   3'- aCCACUUUUUCUCC-AUCUCGu---CCAgg -5'
3618 3' -49.1 NC_001650.1 + 114001 0.76 0.799475
Target:  5'- aGGUucagGGAGAAGAGGauggGGAgGUAGGUCCu -3'
miRNA:   3'- aCCA----CUUUUUCUCCa---UCU-CGUCCAGG- -5'
3618 3' -49.1 NC_001650.1 + 119545 0.76 0.817768
Target:  5'- gGGUcgcccGAGGGGGGGUAgGGGCAGGUCUc -3'
miRNA:   3'- aCCAc----UUUUUCUCCAU-CUCGUCCAGG- -5'
3618 3' -49.1 NC_001650.1 + 155038 0.76 0.817768
Target:  5'- gGGUGGuaggcggccGAGGGGUcgcAGAGCAGGcCCa -3'
miRNA:   3'- aCCACUuu-------UUCUCCA---UCUCGUCCaGG- -5'
3618 3' -49.1 NC_001650.1 + 155623 0.75 0.852099
Target:  5'- aGGggGGAGGAGAGGUGGGGaGGGgCCu -3'
miRNA:   3'- aCCa-CUUUUUCUCCAUCUCgUCCaGG- -5'
3618 3' -49.1 NC_001650.1 + 108500 0.75 0.868005
Target:  5'- ---aGAAAGAGAGGUAGAuGUaguguaugAGGUCCg -3'
miRNA:   3'- accaCUUUUUCUCCAUCU-CG--------UCCAGG- -5'
3618 3' -49.1 NC_001650.1 + 121566 0.75 0.868005
Target:  5'- aUGGUGGAGAAG-GGU--GGCAGG-CCu -3'
miRNA:   3'- -ACCACUUUUUCuCCAucUCGUCCaGG- -5'
3618 3' -49.1 NC_001650.1 + 163418 0.75 0.875618
Target:  5'- cGGcgGAGGGAGAGGUGGAGgaguCAGGUa- -3'
miRNA:   3'- aCCa-CUUUUUCUCCAUCUC----GUCCAgg -5'
3618 3' -49.1 NC_001650.1 + 58642 0.75 0.875618
Target:  5'- gGGUGggGuuGGGGGGcAGGuGguGGUCCg -3'
miRNA:   3'- aCCACuuU--UUCUCCaUCU-CguCCAGG- -5'
3618 3' -49.1 NC_001650.1 + 11265 0.75 0.875618
Target:  5'- cGGUGGGAAAGAGa-GGGGCgugugcccggagGGGUCCu -3'
miRNA:   3'- aCCACUUUUUCUCcaUCUCG------------UCCAGG- -5'
3618 3' -49.1 NC_001650.1 + 177972 0.75 0.875618
Target:  5'- cGGUGGGAAAGAGa-GGGGCgugugcccggagGGGUCCu -3'
miRNA:   3'- aCCACUUUUUCUCcaUCUCG------------UCCAGG- -5'
3618 3' -49.1 NC_001650.1 + 11119 0.74 0.890133
Target:  5'- uUGGUGguGGAG-GGUGGuGguGGUCUc -3'
miRNA:   3'- -ACCACuuUUUCuCCAUCuCguCCAGG- -5'
3618 3' -49.1 NC_001650.1 + 177826 0.74 0.890133
Target:  5'- uUGGUGguGGAG-GGUGGuGguGGUCUc -3'
miRNA:   3'- -ACCACuuUUUCuCCAUCuCguCCAGG- -5'
3618 3' -49.1 NC_001650.1 + 163253 0.74 0.903669
Target:  5'- gGGUGAAuc--GGGUGGAGCGGGg-- -3'
miRNA:   3'- aCCACUUuuucUCCAUCUCGUCCagg -5'
3618 3' -49.1 NC_001650.1 + 136328 0.74 0.909432
Target:  5'- -cGUGAGGAGGuAGGUGGcgaagcaGGaCAGGUCCg -3'
miRNA:   3'- acCACUUUUUC-UCCAUC-------UC-GUCCAGG- -5'
3618 3' -49.1 NC_001650.1 + 132770 0.73 0.922075
Target:  5'- aGGaGGAGGAGGGGgaaggGGaAGCGGGUCa -3'
miRNA:   3'- aCCaCUUUUUCUCCa----UC-UCGUCCAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.