miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3618 5' -60.6 NC_001650.1 + 127821 0.66 0.786225
Target:  5'- uGGGGCaggaaGCUGG-GCAUCcCCACCCg-- -3'
miRNA:   3'- -CCCCG-----UGACCaUGUGGaGGUGGGgga -5'
3618 5' -60.6 NC_001650.1 + 114708 0.66 0.786225
Target:  5'- cGGGGCGCUccggaaGcGUGCACCUcgagagagaCCugUCCUg -3'
miRNA:   3'- -CCCCGUGA------C-CAUGUGGA---------GGugGGGGa -5'
3618 5' -60.6 NC_001650.1 + 133100 0.66 0.786225
Target:  5'- cGGGCGCcac--CGCCUCCACCaCCUc -3'
miRNA:   3'- cCCCGUGaccauGUGGAGGUGG-GGGa -5'
3618 5' -60.6 NC_001650.1 + 126572 0.66 0.786225
Target:  5'- aGGGCAgUuccuCAUUUCCACCCCCc -3'
miRNA:   3'- cCCCGUgAccauGUGGAGGUGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 135823 0.66 0.786225
Target:  5'- aGGGGUugccGCaGG-GCACCgUCCucCCCCCg -3'
miRNA:   3'- -CCCCG----UGaCCaUGUGG-AGGu-GGGGGa -5'
3618 5' -60.6 NC_001650.1 + 131970 0.66 0.786225
Target:  5'- uGGGccaGCugUGGaGCACg-CUGCCCCCg -3'
miRNA:   3'- -CCC---CGugACCaUGUGgaGGUGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 69154 0.66 0.77738
Target:  5'- aGGGGCGCga--GCGCCUCCAggUCCg -3'
miRNA:   3'- -CCCCGUGaccaUGUGGAGGUggGGGa -5'
3618 5' -60.6 NC_001650.1 + 59655 0.66 0.77738
Target:  5'- aGGGGUcCUucgcGG-ACGCCUCgGCCgCCUg -3'
miRNA:   3'- -CCCCGuGA----CCaUGUGGAGgUGGgGGA- -5'
3618 5' -60.6 NC_001650.1 + 145830 0.66 0.77738
Target:  5'- -aGGUcccugaGCUGGUccACGCC-CUGCCCCCg -3'
miRNA:   3'- ccCCG------UGACCA--UGUGGaGGUGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 122674 0.66 0.77738
Target:  5'- cGGGCAC-GG-GCACgUCCACguaCCCg -3'
miRNA:   3'- cCCCGUGaCCaUGUGgAGGUGg--GGGa -5'
3618 5' -60.6 NC_001650.1 + 108714 0.66 0.77738
Target:  5'- uGGGGa----GUACcCCUCCACCCCg- -3'
miRNA:   3'- -CCCCgugacCAUGuGGAGGUGGGGga -5'
3618 5' -60.6 NC_001650.1 + 30873 0.66 0.768417
Target:  5'- -cGGCGC----GCGCgUCCGCCCCCa -3'
miRNA:   3'- ccCCGUGaccaUGUGgAGGUGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 57324 0.66 0.768417
Target:  5'- --aGCGCcGGUgGCACCcCCACCCgCCUg -3'
miRNA:   3'- cccCGUGaCCA-UGUGGaGGUGGG-GGA- -5'
3618 5' -60.6 NC_001650.1 + 130798 0.66 0.768417
Target:  5'- gGGaGGCGCUGG-ACGCC-CCGgaccuggcgguCCUCCa -3'
miRNA:   3'- -CC-CCGUGACCaUGUGGaGGU-----------GGGGGa -5'
3618 5' -60.6 NC_001650.1 + 94098 0.66 0.768417
Target:  5'- aGGGCcguCaGGUAgGCCUUgACCuCCCUg -3'
miRNA:   3'- cCCCGu--GaCCAUgUGGAGgUGG-GGGA- -5'
3618 5' -60.6 NC_001650.1 + 31622 0.66 0.767514
Target:  5'- aGGGaGCACcuggacuccauagUGGUuCACUUCUACCgCCUc -3'
miRNA:   3'- -CCC-CGUG-------------ACCAuGUGGAGGUGGgGGA- -5'
3618 5' -60.6 NC_001650.1 + 103008 0.66 0.762075
Target:  5'- aGGGCccgccuguuccucauGCUGGgagGgagaggccggcgcCGCCUCCuCCCCCUg -3'
miRNA:   3'- cCCCG---------------UGACCa--U-------------GUGGAGGuGGGGGA- -5'
3618 5' -60.6 NC_001650.1 + 57977 0.66 0.759341
Target:  5'- cGGGGCGucgaUGGgcuguccgaACCUCUGCCCCa- -3'
miRNA:   3'- -CCCCGUg---ACCaug------UGGAGGUGGGGga -5'
3618 5' -60.6 NC_001650.1 + 22002 0.66 0.759341
Target:  5'- cGGGGC-CUcGGccgGCGcCCUCCccggcguCCCCCa -3'
miRNA:   3'- -CCCCGuGA-CCa--UGU-GGAGGu------GGGGGa -5'
3618 5' -60.6 NC_001650.1 + 67906 0.66 0.753846
Target:  5'- uGGGCcucaGCUGGaaacUGCACCUCCAUaagaauugaggauagCCUCUg -3'
miRNA:   3'- cCCCG----UGACC----AUGUGGAGGUG---------------GGGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.