miRNA display CGI


Results 1 - 20 of 140 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3618 5' -60.6 NC_001650.1 + 69154 0.66 0.77738
Target:  5'- aGGGGCGCga--GCGCCUCCAggUCCg -3'
miRNA:   3'- -CCCCGUGaccaUGUGGAGGUggGGGa -5'
3618 5' -60.6 NC_001650.1 + 170406 0.66 0.750163
Target:  5'- aGGGGCACaUGGU---CC-CCGCCgCCa -3'
miRNA:   3'- -CCCCGUG-ACCAuguGGaGGUGGgGGa -5'
3618 5' -60.6 NC_001650.1 + 145830 0.66 0.77738
Target:  5'- -aGGUcccugaGCUGGUccACGCC-CUGCCCCCg -3'
miRNA:   3'- ccCCG------UGACCA--UGUGGaGGUGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 59655 0.66 0.77738
Target:  5'- aGGGGUcCUucgcGG-ACGCCUCgGCCgCCUg -3'
miRNA:   3'- -CCCCGuGA----CCaUGUGGAGgUGGgGGA- -5'
3618 5' -60.6 NC_001650.1 + 130798 0.66 0.768417
Target:  5'- gGGaGGCGCUGG-ACGCC-CCGgaccuggcgguCCUCCa -3'
miRNA:   3'- -CC-CCGUGACCaUGUGGaGGU-----------GGGGGa -5'
3618 5' -60.6 NC_001650.1 + 57977 0.66 0.759341
Target:  5'- cGGGGCGucgaUGGgcuguccgaACCUCUGCCCCa- -3'
miRNA:   3'- -CCCCGUg---ACCaug------UGGAGGUGGGGga -5'
3618 5' -60.6 NC_001650.1 + 57324 0.66 0.768417
Target:  5'- --aGCGCcGGUgGCACCcCCACCCgCCUg -3'
miRNA:   3'- cccCGUGaCCA-UGUGGaGGUGGG-GGA- -5'
3618 5' -60.6 NC_001650.1 + 135823 0.66 0.786225
Target:  5'- aGGGGUugccGCaGG-GCACCgUCCucCCCCCg -3'
miRNA:   3'- -CCCCG----UGaCCaUGUGG-AGGu-GGGGGa -5'
3618 5' -60.6 NC_001650.1 + 31622 0.66 0.767514
Target:  5'- aGGGaGCACcuggacuccauagUGGUuCACUUCUACCgCCUc -3'
miRNA:   3'- -CCC-CGUG-------------ACCAuGUGGAGGUGGgGGA- -5'
3618 5' -60.6 NC_001650.1 + 117767 0.66 0.750163
Target:  5'- aGGGGCgacaGCcGGUcgGCGcCCUCC-CCCUCUc -3'
miRNA:   3'- -CCCCG----UGaCCA--UGU-GGAGGuGGGGGA- -5'
3618 5' -60.6 NC_001650.1 + 600 0.66 0.750163
Target:  5'- gGGGGCgaggccggGCUGccGC-CCUCCcccggGCCCCCa -3'
miRNA:   3'- -CCCCG--------UGACcaUGuGGAGG-----UGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 156917 0.66 0.73153
Target:  5'- aGGGGCGCcg--ACGCCUCgugaGCCuCCCg -3'
miRNA:   3'- -CCCCGUGaccaUGUGGAGg---UGG-GGGa -5'
3618 5' -60.6 NC_001650.1 + 135099 0.66 0.73153
Target:  5'- uGGGUagccucagugGCUGGUAUcCCUcgCCAUCCCCc -3'
miRNA:   3'- cCCCG----------UGACCAUGuGGA--GGUGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 155751 0.66 0.74089
Target:  5'- aGGGGCucggugcaGCcGGgcagGCACagcacggCCGCCCCCa -3'
miRNA:   3'- -CCCCG--------UGaCCa---UGUGga-----GGUGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 166807 0.66 0.732469
Target:  5'- cGGGGCccucccaacccuaauGCgGGUGCucuaaguCCUCCcuaacccuaaucggACCCCCUu -3'
miRNA:   3'- -CCCCG---------------UGaCCAUGu------GGAGG--------------UGGGGGA- -5'
3618 5' -60.6 NC_001650.1 + 167307 0.66 0.750163
Target:  5'- gGGGGCgaggccggGCUGccGC-CCUCCcccggGCCCCCa -3'
miRNA:   3'- -CCCCG--------UGACcaUGuGGAGG-----UGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 100 0.66 0.732469
Target:  5'- cGGGGCccucccaacccuaauGCgGGUGCucuaaguCCUCCcuaacccuaaucggACCCCCUu -3'
miRNA:   3'- -CCCCG---------------UGaCCAUGu------GGAGG--------------UGGGGGA- -5'
3618 5' -60.6 NC_001650.1 + 174457 0.66 0.74089
Target:  5'- uGGGCcCgGGUGCuauauuGCCUCagGCCCCCc -3'
miRNA:   3'- cCCCGuGaCCAUG------UGGAGg-UGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 3699 0.66 0.750163
Target:  5'- aGGGGCACaUGGU---CC-CCGCCgCCa -3'
miRNA:   3'- -CCCCGUG-ACCAuguGGaGGUGGgGGa -5'
3618 5' -60.6 NC_001650.1 + 7750 0.66 0.74089
Target:  5'- uGGGCcCgGGUGCuauauuGCCUCagGCCCCCc -3'
miRNA:   3'- cCCCGuGaCCAUG------UGGAGg-UGGGGGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.