miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3618 5' -60.6 NC_001650.1 + 167307 0.66 0.750163
Target:  5'- gGGGGCgaggccggGCUGccGC-CCUCCcccggGCCCCCa -3'
miRNA:   3'- -CCCCG--------UGACcaUGuGGAGG-----UGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 34675 0.66 0.750163
Target:  5'- cGGGuGCGCgcccggcuccUGGgcCGCCcucUCCACCCCg- -3'
miRNA:   3'- -CCC-CGUG----------ACCauGUGG---AGGUGGGGga -5'
3618 5' -60.6 NC_001650.1 + 3699 0.66 0.750163
Target:  5'- aGGGGCACaUGGU---CC-CCGCCgCCa -3'
miRNA:   3'- -CCCCGUG-ACCAuguGGaGGUGGgGGa -5'
3618 5' -60.6 NC_001650.1 + 117767 0.66 0.750163
Target:  5'- aGGGGCgacaGCcGGUcgGCGcCCUCC-CCCUCUc -3'
miRNA:   3'- -CCCCG----UGaCCA--UGU-GGAGGuGGGGGA- -5'
3618 5' -60.6 NC_001650.1 + 170406 0.66 0.750163
Target:  5'- aGGGGCACaUGGU---CC-CCGCCgCCa -3'
miRNA:   3'- -CCCCGUG-ACCAuguGGaGGUGGgGGa -5'
3618 5' -60.6 NC_001650.1 + 600 0.66 0.750163
Target:  5'- gGGGGCgaggccggGCUGccGC-CCUCCcccggGCCCCCa -3'
miRNA:   3'- -CCCCG--------UGACcaUGuGGAGG-----UGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 7750 0.66 0.74089
Target:  5'- uGGGCcCgGGUGCuauauuGCCUCagGCCCCCc -3'
miRNA:   3'- cCCCGuGaCCAUG------UGGAGg-UGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 76134 0.66 0.74089
Target:  5'- -aGGCGCaGGUgugccuauGCACCUUUACCuCCCg -3'
miRNA:   3'- ccCCGUGaCCA--------UGUGGAGGUGG-GGGa -5'
3618 5' -60.6 NC_001650.1 + 155751 0.66 0.74089
Target:  5'- aGGGGCucggugcaGCcGGgcagGCACagcacggCCGCCCCCa -3'
miRNA:   3'- -CCCCG--------UGaCCa---UGUGga-----GGUGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 174457 0.66 0.74089
Target:  5'- uGGGCcCgGGUGCuauauuGCCUCagGCCCCCc -3'
miRNA:   3'- cCCCGuGaCCAUG------UGGAGg-UGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 98692 0.66 0.74089
Target:  5'- -aGGCGCcugaggcugGGUcgucguccACAcCCUCCGCCCCCc -3'
miRNA:   3'- ccCCGUGa--------CCA--------UGU-GGAGGUGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 166807 0.66 0.732469
Target:  5'- cGGGGCccucccaacccuaauGCgGGUGCucuaaguCCUCCcuaacccuaaucggACCCCCUu -3'
miRNA:   3'- -CCCCG---------------UGaCCAUGu------GGAGG--------------UGGGGGA- -5'
3618 5' -60.6 NC_001650.1 + 100 0.66 0.732469
Target:  5'- cGGGGCccucccaacccuaauGCgGGUGCucuaaguCCUCCcuaacccuaaucggACCCCCUu -3'
miRNA:   3'- -CCCCG---------------UGaCCAUGu------GGAGG--------------UGGGGGA- -5'
3618 5' -60.6 NC_001650.1 + 133477 0.66 0.73153
Target:  5'- -cGGCGCgGGgGCuucgGCCUCUgcgGCCCCCUg -3'
miRNA:   3'- ccCCGUGaCCaUG----UGGAGG---UGGGGGA- -5'
3618 5' -60.6 NC_001650.1 + 156917 0.66 0.73153
Target:  5'- aGGGGCGCcg--ACGCCUCgugaGCCuCCCg -3'
miRNA:   3'- -CCCCGUGaccaUGUGGAGg---UGG-GGGa -5'
3618 5' -60.6 NC_001650.1 + 136303 0.66 0.73153
Target:  5'- uGGGGC--UGG-ACAaggCCGCCCCCg -3'
miRNA:   3'- -CCCCGugACCaUGUggaGGUGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 135099 0.66 0.73153
Target:  5'- uGGGUagccucagugGCUGGUAUcCCUcgCCAUCCCCc -3'
miRNA:   3'- cCCCG----------UGACCAUGuGGA--GGUGGGGGa -5'
3618 5' -60.6 NC_001650.1 + 83739 0.66 0.73153
Target:  5'- cGGGGCGCcccGUgccuGCACCUCU-CCCaCCUa -3'
miRNA:   3'- -CCCCGUGac-CA----UGUGGAGGuGGG-GGA- -5'
3618 5' -60.6 NC_001650.1 + 24182 0.67 0.722091
Target:  5'- cGGGGuCGCgcuggaGGUGCcgcuguCCUCCGCCUCa- -3'
miRNA:   3'- -CCCC-GUGa-----CCAUGu-----GGAGGUGGGGga -5'
3618 5' -60.6 NC_001650.1 + 70446 0.67 0.722091
Target:  5'- aGGGGC---GGUuaagaccauCACCUCCGCCCUg- -3'
miRNA:   3'- -CCCCGugaCCAu--------GUGGAGGUGGGGga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.