miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3619 3' -60.8 NC_001650.1 + 127990 0.66 0.722427
Target:  5'- gCAGCAGGUUCuuGGC-CUuggaGGGGUGGGc -3'
miRNA:   3'- aGUCGUCCAGG--UCGuGG----UCCCGCCUu -5'
3619 3' -60.8 NC_001650.1 + 51350 0.66 0.722427
Target:  5'- uUCuGCAGGUgCugcGCACCGGGGacaGGc- -3'
miRNA:   3'- -AGuCGUCCAgGu--CGUGGUCCCg--CCuu -5'
3619 3' -60.8 NC_001650.1 + 71972 0.66 0.722427
Target:  5'- -aAGUucaucugCCAGCACCuGGGCGGGg -3'
miRNA:   3'- agUCGucca---GGUCGUGGuCCCGCCUu -5'
3619 3' -60.8 NC_001650.1 + 108881 0.66 0.722427
Target:  5'- gCGGcCAGGUCCAGCagGCCgugcAGGuCGGGGg -3'
miRNA:   3'- aGUC-GUCCAGGUCG--UGG----UCCcGCCUU- -5'
3619 3' -60.8 NC_001650.1 + 74979 0.66 0.712739
Target:  5'- cCAGCAGGcCCAGCAugccgcCCGGGuuGGc- -3'
miRNA:   3'- aGUCGUCCaGGUCGU------GGUCCcgCCuu -5'
3619 3' -60.8 NC_001650.1 + 135335 0.66 0.702986
Target:  5'- gCAGCaccAGGUCCAGC-UCGGucGCGGAGu -3'
miRNA:   3'- aGUCG---UCCAGGUCGuGGUCc-CGCCUU- -5'
3619 3' -60.8 NC_001650.1 + 27195 0.66 0.702986
Target:  5'- --uGCAGGgaguuUCCAGCgACCggccacaggGGGGCGGGc -3'
miRNA:   3'- aguCGUCC-----AGGUCG-UGG---------UCCCGCCUu -5'
3619 3' -60.8 NC_001650.1 + 51311 0.66 0.693176
Target:  5'- -uGGCcucGGcCCAGCACCAgGGGCuGAAc -3'
miRNA:   3'- agUCGu--CCaGGUCGUGGU-CCCGcCUU- -5'
3619 3' -60.8 NC_001650.1 + 102747 0.66 0.693176
Target:  5'- gCAGCAGGagCAGCAacaucagCAGGG-GGAGg -3'
miRNA:   3'- aGUCGUCCagGUCGUg------GUCCCgCCUU- -5'
3619 3' -60.8 NC_001650.1 + 22496 0.66 0.693176
Target:  5'- -gAGgAGGUCCAGCuccgagGCCccGGUGGAGa -3'
miRNA:   3'- agUCgUCCAGGUCG------UGGucCCGCCUU- -5'
3619 3' -60.8 NC_001650.1 + 109223 0.66 0.683317
Target:  5'- uUCAGgGGGaggucaaagUCCAGCACCAGGuugaagaCGGGc -3'
miRNA:   3'- -AGUCgUCC---------AGGUCGUGGUCCc------GCCUu -5'
3619 3' -60.8 NC_001650.1 + 101838 0.66 0.682329
Target:  5'- gCAGCAGGugcUCCAGCAggcgaccgccuauCCAGccuccgugcaGGCGGGc -3'
miRNA:   3'- aGUCGUCC---AGGUCGU-------------GGUC----------CCGCCUu -5'
3619 3' -60.8 NC_001650.1 + 159581 0.66 0.677383
Target:  5'- aUCAGgAGGagaCAGCACCaucaacauggcggcgGGGGCGGu- -3'
miRNA:   3'- -AGUCgUCCag-GUCGUGG---------------UCCCGCCuu -5'
3619 3' -60.8 NC_001650.1 + 83542 0.66 0.677383
Target:  5'- gUCAGCAGGUUCAGgACCucccucgacugggucAuccuGGGCGGc- -3'
miRNA:   3'- -AGUCGUCCAGGUCgUGG---------------U----CCCGCCuu -5'
3619 3' -60.8 NC_001650.1 + 122378 0.66 0.673419
Target:  5'- cCAGCAGGUU--GC-CCAGGGCGc-- -3'
miRNA:   3'- aGUCGUCCAGguCGuGGUCCCGCcuu -5'
3619 3' -60.8 NC_001650.1 + 62876 0.66 0.673419
Target:  5'- cCAGgGGGcUCCggAGCACCcgGGGGCGcGAc -3'
miRNA:   3'- aGUCgUCC-AGG--UCGUGG--UCCCGC-CUu -5'
3619 3' -60.8 NC_001650.1 + 131903 0.66 0.673419
Target:  5'- -aAGgAGGaCgGGCggGCCAGGGCGGGc -3'
miRNA:   3'- agUCgUCCaGgUCG--UGGUCCCGCCUu -5'
3619 3' -60.8 NC_001650.1 + 56696 0.67 0.663488
Target:  5'- aCAGCAGGgaUgGGCGCCAgcuGGGCuGGGGu -3'
miRNA:   3'- aGUCGUCCa-GgUCGUGGU---CCCG-CCUU- -5'
3619 3' -60.8 NC_001650.1 + 111702 0.67 0.663488
Target:  5'- gCGGCGGGgaucaCCAGCcCgGGGGUGGc- -3'
miRNA:   3'- aGUCGUCCa----GGUCGuGgUCCCGCCuu -5'
3619 3' -60.8 NC_001650.1 + 76723 0.67 0.663488
Target:  5'- cCGGCAGGgggcugcgcUCguGCAgCAGGGUGGc- -3'
miRNA:   3'- aGUCGUCC---------AGguCGUgGUCCCGCCuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.