miRNA display CGI


Results 1 - 20 of 163 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3619 5' -62.7 NC_001650.1 + 102526 0.66 0.660002
Target:  5'- -aUGCAGCCgCAGCCccaGCCCUaCCa -3'
miRNA:   3'- ucAUGUCGGgGUCGGac-CGGGAcGGg -5'
3619 5' -62.7 NC_001650.1 + 131847 0.66 0.660002
Target:  5'- cAGgcagGCGGCCgCCAGCUcgGGCCgggugGCCa -3'
miRNA:   3'- -UCa---UGUCGG-GGUCGGa-CCGGga---CGGg -5'
3619 5' -62.7 NC_001650.1 + 24077 0.66 0.660002
Target:  5'- --gGCGGCCCUGGCCgagaUGGCCaugGCg- -3'
miRNA:   3'- ucaUGUCGGGGUCGG----ACCGGga-CGgg -5'
3619 5' -62.7 NC_001650.1 + 111444 0.66 0.660002
Target:  5'- --gGCGGCgcgaggCCAGCCc-GCCCUGCCa -3'
miRNA:   3'- ucaUGUCGg-----GGUCGGacCGGGACGGg -5'
3619 5' -62.7 NC_001650.1 + 42859 0.66 0.660002
Target:  5'- cAGUGCuugcguGGCCCCGggcacgugugucGCCUGGUgCggUGUCCa -3'
miRNA:   3'- -UCAUG------UCGGGGU------------CGGACCGgG--ACGGG- -5'
3619 5' -62.7 NC_001650.1 + 30918 0.66 0.660002
Target:  5'- --cGCGGCCCC-GCCUcucGCUCUcccGCCCc -3'
miRNA:   3'- ucaUGUCGGGGuCGGAc--CGGGA---CGGG- -5'
3619 5' -62.7 NC_001650.1 + 132644 0.66 0.660002
Target:  5'- ------cCCCCAGCCaGGCggCCUGCCUc -3'
miRNA:   3'- ucaugucGGGGUCGGaCCG--GGACGGG- -5'
3619 5' -62.7 NC_001650.1 + 61225 0.66 0.659027
Target:  5'- --gGCAGUCCCAGUggCU-GCCCUucuacggGCCCu -3'
miRNA:   3'- ucaUGUCGGGGUCG--GAcCGGGA-------CGGG- -5'
3619 5' -62.7 NC_001650.1 + 69710 0.66 0.659027
Target:  5'- gGGUACcagcaGGCCCCgaggagcAGUCUccggacGGCCCUGCa- -3'
miRNA:   3'- -UCAUG-----UCGGGG-------UCGGA------CCGGGACGgg -5'
3619 5' -62.7 NC_001650.1 + 175873 0.66 0.650246
Target:  5'- aGGaUAgAGCCCCAGCCcugcggGGUgCCgggguuagGCCCc -3'
miRNA:   3'- -UC-AUgUCGGGGUCGGa-----CCG-GGa-------CGGG- -5'
3619 5' -62.7 NC_001650.1 + 9166 0.66 0.650246
Target:  5'- aGGaUAgAGCCCCAGCCcugcggGGUgCCgggguuagGCCCc -3'
miRNA:   3'- -UC-AUgUCGGGGUCGGa-----CCG-GGa-------CGGG- -5'
3619 5' -62.7 NC_001650.1 + 89535 0.66 0.650246
Target:  5'- --cGCGGCCCgGGCCaGGUCCaggGUCa -3'
miRNA:   3'- ucaUGUCGGGgUCGGaCCGGGa--CGGg -5'
3619 5' -62.7 NC_001650.1 + 22166 0.66 0.650246
Target:  5'- cGUGaAGCCCaggUAGCCgggGGUCCUGCa- -3'
miRNA:   3'- uCAUgUCGGG---GUCGGa--CCGGGACGgg -5'
3619 5' -62.7 NC_001650.1 + 158315 0.66 0.644385
Target:  5'- uGGgcCAGCCCCAGCUgcaggGGCagguguuucagcucuCgcugCUGCCCu -3'
miRNA:   3'- -UCauGUCGGGGUCGGa----CCG---------------G----GACGGG- -5'
3619 5' -62.7 NC_001650.1 + 103579 0.66 0.644385
Target:  5'- -aUAUAGCCUCAgGCUggggcacggacgcguUGGCCCcGUCCg -3'
miRNA:   3'- ucAUGUCGGGGU-CGG---------------ACCGGGaCGGG- -5'
3619 5' -62.7 NC_001650.1 + 156779 0.66 0.640477
Target:  5'- ----gGGCgUCGGCCUGGCCUUcaGCUCu -3'
miRNA:   3'- ucaugUCGgGGUCGGACCGGGA--CGGG- -5'
3619 5' -62.7 NC_001650.1 + 60596 0.66 0.640477
Target:  5'- uGUGCcGCCCgaaaaAGUCUGgggcguaggcGCCCUGCCg -3'
miRNA:   3'- uCAUGuCGGGg----UCGGAC----------CGGGACGGg -5'
3619 5' -62.7 NC_001650.1 + 41348 0.66 0.640477
Target:  5'- --cACGGCCCCcuCgaGGUCUUGCCa -3'
miRNA:   3'- ucaUGUCGGGGucGgaCCGGGACGGg -5'
3619 5' -62.7 NC_001650.1 + 83534 0.66 0.640477
Target:  5'- aGGUGCAggcacggggcGCCCCguuucAGgCUGGCCCUGg-- -3'
miRNA:   3'- -UCAUGU----------CGGGG-----UCgGACCGGGACggg -5'
3619 5' -62.7 NC_001650.1 + 143928 0.66 0.639499
Target:  5'- -----cGCCCCGggcagguGCCUGGUgCUGUCCc -3'
miRNA:   3'- ucauguCGGGGU-------CGGACCGgGACGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.