miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
362 5' -54.9 AC_000011.1 + 30971 0.66 0.596588
Target:  5'- cGCUGguCGcgguacuggggguggUGGCGCAGGuaggcgAUGCGCa- -3'
miRNA:   3'- aCGACguGC---------------AUUGCGUCC------UACGCGag -5'
362 5' -54.9 AC_000011.1 + 707 0.66 0.557745
Target:  5'- cGCUGCACGauuuguaugaucUGGaGguGGAUGUGCcCg -3'
miRNA:   3'- aCGACGUGC------------AUUgCguCCUACGCGaG- -5'
362 5' -54.9 AC_000011.1 + 9878 0.66 0.544198
Target:  5'- gGCUGgACG-AGCGcCAGGucggcgacgacGCGCUCg -3'
miRNA:   3'- aCGACgUGCaUUGC-GUCCua---------CGCGAG- -5'
362 5' -54.9 AC_000011.1 + 17019 0.67 0.535227
Target:  5'- gGCUGCugGUAugacCGCGGuaGAaGCGCg- -3'
miRNA:   3'- aCGACGugCAUu---GCGUC--CUaCGCGag -5'
362 5' -54.9 AC_000011.1 + 4900 0.67 0.480491
Target:  5'- cGC-GCACGUGcauguucucGCGCaccaguuccgccAGGAgGCGCUCu -3'
miRNA:   3'- aCGaCGUGCAU---------UGCG------------UCCUaCGCGAG- -5'
362 5' -54.9 AC_000011.1 + 21664 0.67 0.480491
Target:  5'- gGUUGCG----GCGCAGGGUGgGUUCc -3'
miRNA:   3'- aCGACGUgcauUGCGUCCUACgCGAG- -5'
362 5' -54.9 AC_000011.1 + 3864 0.68 0.459363
Target:  5'- aGCUGCAgGagcaGACGCGGGccGCGgUUg -3'
miRNA:   3'- aCGACGUgCa---UUGCGUCCuaCGCgAG- -5'
362 5' -54.9 AC_000011.1 + 11535 0.68 0.459363
Target:  5'- cUGCagaGCAuCGUggUGCAGGA-GCGCg- -3'
miRNA:   3'- -ACGa--CGU-GCAuuGCGUCCUaCGCGag -5'
362 5' -54.9 AC_000011.1 + 24608 0.68 0.459363
Target:  5'- gUGCUGCACaccacccuGCGCGGGGaggcccgGCGCg- -3'
miRNA:   3'- -ACGACGUGcau-----UGCGUCCUa------CGCGag -5'
362 5' -54.9 AC_000011.1 + 24988 0.68 0.459363
Target:  5'- cGgaGCAgGUGGCggGCAGGAUuccggaGCGUUCg -3'
miRNA:   3'- aCgaCGUgCAUUG--CGUCCUA------CGCGAG- -5'
362 5' -54.9 AC_000011.1 + 15573 0.69 0.418655
Target:  5'- --gUGCGCGU-GCGCGGGcacuuccGCGCUCc -3'
miRNA:   3'- acgACGUGCAuUGCGUCCua-----CGCGAG- -5'
362 5' -54.9 AC_000011.1 + 15850 0.7 0.361903
Target:  5'- gGC-GCACGgGACGCAGGGccaUGCUCa -3'
miRNA:   3'- aCGaCGUGCaUUGCGUCCUac-GCGAG- -5'
362 5' -54.9 AC_000011.1 + 5236 0.72 0.265239
Target:  5'- gGCUGgGCGcuuGCG-AGGGUGCGCUUc -3'
miRNA:   3'- aCGACgUGCau-UGCgUCCUACGCGAG- -5'
362 5' -54.9 AC_000011.1 + 15862 0.72 0.258205
Target:  5'- cGCcGCGCGcAugGCGGGG-GUGCUCc -3'
miRNA:   3'- aCGaCGUGCaUugCGUCCUaCGCGAG- -5'
362 5' -54.9 AC_000011.1 + 34280 0.73 0.21317
Target:  5'- cGCUGCAUGgcGgGCGGGGcgGUGCUg -3'
miRNA:   3'- aCGACGUGCauUgCGUCCUa-CGCGAg -5'
362 5' -54.9 AC_000011.1 + 22433 0.75 0.156097
Target:  5'- cGCUGCuGCGUgcacGACGCcGGGUGCGC-Ca -3'
miRNA:   3'- aCGACG-UGCA----UUGCGuCCUACGCGaG- -5'
362 5' -54.9 AC_000011.1 + 13031 1.09 0.000542
Target:  5'- cUGCUGCACGUAACGCAGGAUGCGCUCc -3'
miRNA:   3'- -ACGACGUGCAUUGCGUCCUACGCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.