miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3620 3' -61.4 NC_001650.1 + 135884 0.66 0.734964
Target:  5'- gUGGUcGGAgagGggGGCCUcugCCCGCCCc -3'
miRNA:   3'- gACCGuCCUa--Ca-UCGGGa--GGGCGGGc -5'
3620 3' -61.4 NC_001650.1 + 158810 0.66 0.734964
Target:  5'- cCUGaGgAGGGUcaGGUCC-CCCGCCCu -3'
miRNA:   3'- -GAC-CgUCCUAcaUCGGGaGGGCGGGc -5'
3620 3' -61.4 NC_001650.1 + 11468 0.66 0.725566
Target:  5'- -cGGCAGGugaGUGGggagCCUCCgGCUCGa -3'
miRNA:   3'- gaCCGUCCua-CAUCg---GGAGGgCGGGC- -5'
3620 3' -61.4 NC_001650.1 + 24437 0.66 0.725566
Target:  5'- -cGaGCGGGAgaggGaGGCCUUCCuCGCCUa -3'
miRNA:   3'- gaC-CGUCCUa---CaUCGGGAGG-GCGGGc -5'
3620 3' -61.4 NC_001650.1 + 178175 0.66 0.725566
Target:  5'- -cGGCAGGugaGUGGggagCCUCCgGCUCGa -3'
miRNA:   3'- gaCCGUCCua-CAUCg---GGAGGgCGGGC- -5'
3620 3' -61.4 NC_001650.1 + 92929 0.66 0.716094
Target:  5'- -gGGCAGGAuccgggggcUGgcGgcaaagaccguCCC-CCCGCCCGa -3'
miRNA:   3'- gaCCGUCCU---------ACauC-----------GGGaGGGCGGGC- -5'
3620 3' -61.4 NC_001650.1 + 7839 0.66 0.716094
Target:  5'- -gGGCcacuGGGUGcaUGGCCCgaCCGCCCc -3'
miRNA:   3'- gaCCGu---CCUAC--AUCGGGagGGCGGGc -5'
3620 3' -61.4 NC_001650.1 + 71886 0.66 0.716094
Target:  5'- aCUGG-GGGAUGUuGCCCaCCaUGCCCc -3'
miRNA:   3'- -GACCgUCCUACAuCGGGaGG-GCGGGc -5'
3620 3' -61.4 NC_001650.1 + 174546 0.66 0.716094
Target:  5'- -gGGCcacuGGGUGcaUGGCCCgaCCGCCCc -3'
miRNA:   3'- gaCCGu---CCUAC--AUCGGGagGGCGGGc -5'
3620 3' -61.4 NC_001650.1 + 30678 0.66 0.716094
Target:  5'- -gGGCGGGAUGggcgAGaCCCcccugagCCGCCCc -3'
miRNA:   3'- gaCCGUCCUACa---UC-GGGag-----GGCGGGc -5'
3620 3' -61.4 NC_001650.1 + 108826 0.66 0.706557
Target:  5'- -cGGcCAGGAUGUcagagagcaGGCCCUgCaCGUCCc -3'
miRNA:   3'- gaCC-GUCCUACA---------UCGGGAgG-GCGGGc -5'
3620 3' -61.4 NC_001650.1 + 119309 0.66 0.706557
Target:  5'- aCUGGCuGGAggaGUAGCCCagcaugcagaCCGCUCc -3'
miRNA:   3'- -GACCGuCCUa--CAUCGGGag--------GGCGGGc -5'
3620 3' -61.4 NC_001650.1 + 145987 0.66 0.706557
Target:  5'- -aGaGCAGGAggcucGUCCUCaCCGCCUGg -3'
miRNA:   3'- gaC-CGUCCUacau-CGGGAG-GGCGGGC- -5'
3620 3' -61.4 NC_001650.1 + 82283 0.66 0.706557
Target:  5'- -cGG-AGGAgggAGCCC-CCCGCUCGc -3'
miRNA:   3'- gaCCgUCCUacaUCGGGaGGGCGGGC- -5'
3620 3' -61.4 NC_001650.1 + 165097 0.66 0.702726
Target:  5'- -gGGUGGGGUGgcggcggcgcgcucUAGUcagggccucccauCCUCCCGCCCc -3'
miRNA:   3'- gaCCGUCCUAC--------------AUCG-------------GGAGGGCGGGc -5'
3620 3' -61.4 NC_001650.1 + 36851 0.66 0.696962
Target:  5'- -aGGCAGGAga-AGaCCCUgaucugcugCCCGUCCGu -3'
miRNA:   3'- gaCCGUCCUacaUC-GGGA---------GGGCGGGC- -5'
3620 3' -61.4 NC_001650.1 + 102346 0.66 0.696962
Target:  5'- uUGGUGcuuccucuuGGcgGUGGCCUUCCUGCUCc -3'
miRNA:   3'- gACCGU---------CCuaCAUCGGGAGGGCGGGc -5'
3620 3' -61.4 NC_001650.1 + 71076 0.66 0.696
Target:  5'- gCUGGCGGGccccacgAUGgaguuGCCgCUCUgGCCCa -3'
miRNA:   3'- -GACCGUCC-------UACau---CGG-GAGGgCGGGc -5'
3620 3' -61.4 NC_001650.1 + 31230 0.66 0.687318
Target:  5'- --aGUGGGAgGgcGCCC-CCCGCCCc -3'
miRNA:   3'- gacCGUCCUaCauCGGGaGGGCGGGc -5'
3620 3' -61.4 NC_001650.1 + 91127 0.66 0.687318
Target:  5'- -aGGCGcucGGAgacugGGUCCUCCCGgCCGc -3'
miRNA:   3'- gaCCGU---CCUaca--UCGGGAGGGCgGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.