miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3620 5' -55.6 NC_001650.1 + 27375 0.66 0.937513
Target:  5'- gAGCAGa-GGGuGGAGGCCCUGAc--- -3'
miRNA:   3'- -UCGUCcgUCCuCUUCUGGGACUagac -5'
3620 5' -55.6 NC_001650.1 + 158655 0.66 0.932556
Target:  5'- --gAGGguGGuGcacGAGGCCCUGGUCa- -3'
miRNA:   3'- ucgUCCguCCuC---UUCUGGGACUAGac -5'
3620 5' -55.6 NC_001650.1 + 90527 0.66 0.932556
Target:  5'- cGguGGCaaagguguucaAGGAGAGGugCCUGGa--- -3'
miRNA:   3'- uCguCCG-----------UCCUCUUCugGGACUagac -5'
3620 5' -55.6 NC_001650.1 + 24134 0.66 0.92736
Target:  5'- cGuCAGGCuGGAcGggGACCCcaUGGguuuUCUGa -3'
miRNA:   3'- uC-GUCCGuCCU-CuuCUGGG--ACU----AGAC- -5'
3620 5' -55.6 NC_001650.1 + 157729 0.66 0.926827
Target:  5'- gGGCAGGgGGGugucccgGGAGGACCUccggGAgCUGg -3'
miRNA:   3'- -UCGUCCgUCC-------UCUUCUGGGa---CUaGAC- -5'
3620 5' -55.6 NC_001650.1 + 30681 0.66 0.921922
Target:  5'- cGCGGGCGGGAugggcGAGACCCcc--CUGa -3'
miRNA:   3'- uCGUCCGUCCUc----UUCUGGGacuaGAC- -5'
3620 5' -55.6 NC_001650.1 + 156392 0.66 0.921922
Target:  5'- gGGCAGuGCGGGGu--GACCCUGGa--- -3'
miRNA:   3'- -UCGUC-CGUCCUcuuCUGGGACUagac -5'
3620 5' -55.6 NC_001650.1 + 30465 0.66 0.921922
Target:  5'- uAGgGGGCGGGAGGggugcaGGGCCUcGAaauacUCUGa -3'
miRNA:   3'- -UCgUCCGUCCUCU------UCUGGGaCU-----AGAC- -5'
3620 5' -55.6 NC_001650.1 + 100123 0.66 0.916244
Target:  5'- gGGcCGGGgAGGGGggGACCCUu----- -3'
miRNA:   3'- -UC-GUCCgUCCUCuuCUGGGAcuagac -5'
3620 5' -55.6 NC_001650.1 + 133883 0.66 0.916244
Target:  5'- uGCGGGCcucgcucgcccGGGAGGAGGaggggCCUGGcUCUGu -3'
miRNA:   3'- uCGUCCG-----------UCCUCUUCUg----GGACU-AGAC- -5'
3620 5' -55.6 NC_001650.1 + 29648 0.66 0.910327
Target:  5'- uGCuGGGCgAGGAGGAGGaccCCCUGGggggagagCUGg -3'
miRNA:   3'- uCG-UCCG-UCCUCUUCU---GGGACUa-------GAC- -5'
3620 5' -55.6 NC_001650.1 + 24719 0.66 0.910327
Target:  5'- cAGcCGGGCAGGAGcAGGAccgccaCCCUGuguuUCUu -3'
miRNA:   3'- -UC-GUCCGUCCUC-UUCU------GGGACu---AGAc -5'
3620 5' -55.6 NC_001650.1 + 58651 0.66 0.910327
Target:  5'- uGGgGGGCAGGuGGugguccGCCCUGGUCc- -3'
miRNA:   3'- -UCgUCCGUCCuCUuc----UGGGACUAGac -5'
3620 5' -55.6 NC_001650.1 + 72701 0.66 0.910327
Target:  5'- gGGCAGGCGGucgccacccacGAGAGGGCCaagCUGGUg-- -3'
miRNA:   3'- -UCGUCCGUC-----------CUCUUCUGG---GACUAgac -5'
3620 5' -55.6 NC_001650.1 + 128499 0.67 0.904172
Target:  5'- gAGCuGcGCAuGGAGAAGAagcCCCUGAUg-- -3'
miRNA:   3'- -UCGuC-CGU-CCUCUUCU---GGGACUAgac -5'
3620 5' -55.6 NC_001650.1 + 103413 0.67 0.904172
Target:  5'- uAGCAGGCacaGGGAGAcgauaaAGGCCgUGAa--- -3'
miRNA:   3'- -UCGUCCG---UCCUCU------UCUGGgACUagac -5'
3620 5' -55.6 NC_001650.1 + 69386 0.67 0.904172
Target:  5'- aGGUA-GCGGGAGAuGAUCCUGAacaucagCUGg -3'
miRNA:   3'- -UCGUcCGUCCUCUuCUGGGACUa------GAC- -5'
3620 5' -55.6 NC_001650.1 + 50012 0.67 0.897781
Target:  5'- gAGCaagAGGaagAGGAGGAGGCCCgGGcCUGa -3'
miRNA:   3'- -UCG---UCCg--UCCUCUUCUGGGaCUaGAC- -5'
3620 5' -55.6 NC_001650.1 + 121843 0.67 0.897781
Target:  5'- gGGCcuGGGCAGGA--AGAUCCUGAg--- -3'
miRNA:   3'- -UCG--UCCGUCCUcuUCUGGGACUagac -5'
3620 5' -55.6 NC_001650.1 + 94168 0.67 0.897781
Target:  5'- --gGGGCAGGuGAAGAgCCUGGcgUCg- -3'
miRNA:   3'- ucgUCCGUCCuCUUCUgGGACU--AGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.