miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3620 5' -55.6 NC_001650.1 + 36855 1.07 0.004144
Target:  5'- cAGCAGGCAGGAGAAGACCCUGAUCUGc -3'
miRNA:   3'- -UCGUCCGUCCUCUUCUGGGACUAGAC- -5'
3620 5' -55.6 NC_001650.1 + 79115 0.81 0.211068
Target:  5'- cGGCGGGCGGGAGGAGGgccagucCCCUGAgcguccucUCUGg -3'
miRNA:   3'- -UCGUCCGUCCUCUUCU-------GGGACU--------AGAC- -5'
3620 5' -55.6 NC_001650.1 + 157365 0.77 0.363505
Target:  5'- cGCuGGuGCAGGAGggGGCCCUGGagUGg -3'
miRNA:   3'- uCG-UC-CGUCCUCuuCUGGGACUagAC- -5'
3620 5' -55.6 NC_001650.1 + 21495 0.77 0.383121
Target:  5'- cGGCAGGCAGGGGGAGAUgagcaaaaaaaaacaCUgGGUCUGg -3'
miRNA:   3'- -UCGUCCGUCCUCUUCUG---------------GGaCUAGAC- -5'
3620 5' -55.6 NC_001650.1 + 101990 0.74 0.506456
Target:  5'- aGGCGGGCuGGuaccugggcucGggGuCCCUGAUCUGg -3'
miRNA:   3'- -UCGUCCGuCCu----------CuuCuGGGACUAGAC- -5'
3620 5' -55.6 NC_001650.1 + 77864 0.73 0.555991
Target:  5'- gGGCagAGGguGGAGAAGGCCgcgCUGGUcCUGg -3'
miRNA:   3'- -UCG--UCCguCCUCUUCUGG---GACUA-GAC- -5'
3620 5' -55.6 NC_001650.1 + 82240 0.73 0.566079
Target:  5'- cAGCGGGCGGGGGAGGACgaUGAg--- -3'
miRNA:   3'- -UCGUCCGUCCUCUUCUGggACUagac -5'
3620 5' -55.6 NC_001650.1 + 164855 0.73 0.606832
Target:  5'- cAGCuaugGGGCGGGAGGaugggAGGCCCUGA-CUa -3'
miRNA:   3'- -UCG----UCCGUCCUCU-----UCUGGGACUaGAc -5'
3620 5' -55.6 NC_001650.1 + 129953 0.72 0.616059
Target:  5'- uGGCGGGCAcgccccuGGAGGcgcccguggcgcGGGCCCUGAggcugCUGa -3'
miRNA:   3'- -UCGUCCGU-------CCUCU------------UCUGGGACUa----GAC- -5'
3620 5' -55.6 NC_001650.1 + 22368 0.72 0.62735
Target:  5'- uGGUGGGCAgcGGGGAGGACCCguucGcgCUGc -3'
miRNA:   3'- -UCGUCCGU--CCUCUUCUGGGa---CuaGAC- -5'
3620 5' -55.6 NC_001650.1 + 122286 0.72 0.658135
Target:  5'- aAGUAGGcCAGGgucAGggGGCgCCUGAUgUGg -3'
miRNA:   3'- -UCGUCC-GUCC---UCuuCUG-GGACUAgAC- -5'
3620 5' -55.6 NC_001650.1 + 88828 0.71 0.668366
Target:  5'- cGCcgGGGCAGGAGuAGACCCcccuggccguccUGAUCa- -3'
miRNA:   3'- uCG--UCCGUCCUCuUCUGGG------------ACUAGac -5'
3620 5' -55.6 NC_001650.1 + 60159 0.71 0.678567
Target:  5'- cAGCAcGGCcccgggaaagaGGGAGGAGGCCggGGUCUGc -3'
miRNA:   3'- -UCGU-CCG-----------UCCUCUUCUGGgaCUAGAC- -5'
3620 5' -55.6 NC_001650.1 + 122150 0.7 0.738652
Target:  5'- gGGC-GGCGGGAGggGgagacggcggcGCCCUGGgcaaccugCUGg -3'
miRNA:   3'- -UCGuCCGUCCUCuuC-----------UGGGACUa-------GAC- -5'
3620 5' -55.6 NC_001650.1 + 51470 0.7 0.738652
Target:  5'- cGguGGUGGGAGggGugACCCUGAacgCUa -3'
miRNA:   3'- uCguCCGUCCUCuuC--UGGGACUa--GAc -5'
3620 5' -55.6 NC_001650.1 + 34549 0.7 0.767558
Target:  5'- cAGCGGGCGGaaGAGGAGGCCCgacGAg--- -3'
miRNA:   3'- -UCGUCCGUC--CUCUUCUGGGa--CUagac -5'
3620 5' -55.6 NC_001650.1 + 131340 0.69 0.776028
Target:  5'- cGCGGGUGGGGcccggccGggGGCCCUGuacgggacUCUGg -3'
miRNA:   3'- uCGUCCGUCCU-------CuuCUGGGACu-------AGAC- -5'
3620 5' -55.6 NC_001650.1 + 74633 0.69 0.776963
Target:  5'- uGGUcgAGGCGGGAGAAGACCaggGuGUCg- -3'
miRNA:   3'- -UCG--UCCGUCCUCUUCUGGga-C-UAGac -5'
3620 5' -55.6 NC_001650.1 + 78387 0.69 0.786238
Target:  5'- aGGCAGGCugauaGAGguGACCCUGAgggUCUc -3'
miRNA:   3'- -UCGUCCGuc---CUCuuCUGGGACU---AGAc -5'
3620 5' -55.6 NC_001650.1 + 159024 0.69 0.80436
Target:  5'- gGGCAGGgCGGGGGAccuGACCCUccUCa- -3'
miRNA:   3'- -UCGUCC-GUCCUCUu--CUGGGAcuAGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.