miRNA display CGI


Results 1 - 20 of 106 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3621 5' -61.8 NC_001650.1 + 93119 0.66 0.731672
Target:  5'- --------aCCGGGGCCACGgCCGUGg -3'
miRNA:   3'- cguccuacgGGCUCCGGUGCgGGCAC- -5'
3621 5' -61.8 NC_001650.1 + 30718 0.66 0.731672
Target:  5'- aGCAGGAcgcgcaggGCaCCGAGGacacguaCGCGUCCGc- -3'
miRNA:   3'- -CGUCCUa-------CG-GGCUCCg------GUGCGGGCac -5'
3621 5' -61.8 NC_001650.1 + 89539 0.66 0.731672
Target:  5'- aGCAcGcgGCCCG-GGCCAgGUCCa-- -3'
miRNA:   3'- -CGUcCuaCGGGCuCCGGUgCGGGcac -5'
3621 5' -61.8 NC_001650.1 + 93939 0.66 0.731672
Target:  5'- aGCAGG-UGCCCGAacuCUggGUCCGUGc -3'
miRNA:   3'- -CGUCCuACGGGCUcc-GGugCGGGCAC- -5'
3621 5' -61.8 NC_001650.1 + 58944 0.66 0.72887
Target:  5'- cGCGGGAgGCCCGGgaggcGGCgGCggcuucuggcacggGCCCGg- -3'
miRNA:   3'- -CGUCCUaCGGGCU-----CCGgUG--------------CGGGCac -5'
3621 5' -61.8 NC_001650.1 + 48115 0.66 0.722306
Target:  5'- aGCAGGAUGgCCagGGGGuCCAUGaCCCc-- -3'
miRNA:   3'- -CGUCCUACgGG--CUCC-GGUGC-GGGcac -5'
3621 5' -61.8 NC_001650.1 + 45421 0.66 0.722306
Target:  5'- -gGGGGUgaGCCCGuGGaaCCGCGCCCc-- -3'
miRNA:   3'- cgUCCUA--CGGGCuCC--GGUGCGGGcac -5'
3621 5' -61.8 NC_001650.1 + 76663 0.66 0.722306
Target:  5'- cCAGGAUGUacaUG-GGCCACugcaccCCCGUGg -3'
miRNA:   3'- cGUCCUACGg--GCuCCGGUGc-----GGGCAC- -5'
3621 5' -61.8 NC_001650.1 + 57522 0.66 0.722306
Target:  5'- gGCGGGAUacagcugaggcGCCggcuggggcUGGGGCUggGCCUGUGg -3'
miRNA:   3'- -CGUCCUA-----------CGG---------GCUCCGGugCGGGCAC- -5'
3621 5' -61.8 NC_001650.1 + 3901 0.66 0.719482
Target:  5'- gGCGGGGaccaugUGCCCcuuaaGGGCCaauggcagagcgggACGCcCCGUGa -3'
miRNA:   3'- -CGUCCU------ACGGGc----UCCGG--------------UGCG-GGCAC- -5'
3621 5' -61.8 NC_001650.1 + 85802 0.66 0.719482
Target:  5'- gGCAGcuUGCCCGGGGgCACguacuccaccgcggGCCUGUu -3'
miRNA:   3'- -CGUCcuACGGGCUCCgGUG--------------CGGGCAc -5'
3621 5' -61.8 NC_001650.1 + 170608 0.66 0.719482
Target:  5'- gGCGGGGaccaugUGCCCcuuaaGGGCCaauggcagagcgggACGCcCCGUGa -3'
miRNA:   3'- -CGUCCU------ACGGGc----UCCGG--------------UGCG-GGCAC- -5'
3621 5' -61.8 NC_001650.1 + 67213 0.66 0.718539
Target:  5'- cGUAcGGGUGCCCGGacaggaugagccuGGCCAgcgagaggcgcggcCGCUCGUa -3'
miRNA:   3'- -CGU-CCUACGGGCU-------------CCGGU--------------GCGGGCAc -5'
3621 5' -61.8 NC_001650.1 + 156484 0.66 0.716651
Target:  5'- gGCAGGcccuggugGCCCGcgggcuggugaccgcGGGCCACGa-CGUGa -3'
miRNA:   3'- -CGUCCua------CGGGC---------------UCCGGUGCggGCAC- -5'
3621 5' -61.8 NC_001650.1 + 125053 0.66 0.712869
Target:  5'- gGCGGGgcGCCuCGcccGGCCAuCGgguaCCCGUGa -3'
miRNA:   3'- -CGUCCuaCGG-GCu--CCGGU-GC----GGGCAC- -5'
3621 5' -61.8 NC_001650.1 + 77946 0.66 0.711922
Target:  5'- aGCGGGGgcgGCUgCGAGGCaccgaggggccguCGCGCCCa-- -3'
miRNA:   3'- -CGUCCUa--CGG-GCUCCG-------------GUGCGGGcac -5'
3621 5' -61.8 NC_001650.1 + 35280 0.66 0.70337
Target:  5'- gGCGGGGcggGCCgGggacgggcgcGGGCCagggccacACGCCUGUGg -3'
miRNA:   3'- -CGUCCUa--CGGgC----------UCCGG--------UGCGGGCAC- -5'
3621 5' -61.8 NC_001650.1 + 47340 0.66 0.70337
Target:  5'- --uGGA-GCCCGGGucGCCcCGCCCGa- -3'
miRNA:   3'- cguCCUaCGGGCUC--CGGuGCGGGCac -5'
3621 5' -61.8 NC_001650.1 + 124366 0.66 0.70337
Target:  5'- aCAGuAUcGCCgGGGGUCGCGCCCaUGa -3'
miRNA:   3'- cGUCcUA-CGGgCUCCGGUGCGGGcAC- -5'
3621 5' -61.8 NC_001650.1 + 85072 0.66 0.702417
Target:  5'- uGCAGGAUcucccugGCCauuGAGGCCAUcaCCCGg- -3'
miRNA:   3'- -CGUCCUA-------CGGg--CUCCGGUGc-GGGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.