miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3622 3' -51.8 NC_001650.1 + 22727 0.66 0.986835
Target:  5'- gGUGGCCccggUGAAGCUguggGGCcUCGaggcGGGGCc -3'
miRNA:   3'- -UACUGGa---AUUUUGA----CCGuAGC----CCCCG- -5'
3622 3' -51.8 NC_001650.1 + 66901 0.66 0.986835
Target:  5'- -gGGCCggGGAGCaUGGgGcCGGGGaGCa -3'
miRNA:   3'- uaCUGGaaUUUUG-ACCgUaGCCCC-CG- -5'
3622 3' -51.8 NC_001650.1 + 95770 0.66 0.985126
Target:  5'- gGUGACCUgccucagGAuauCUGGC-UCGGGaGuGCu -3'
miRNA:   3'- -UACUGGAa------UUuu-GACCGuAGCCC-C-CG- -5'
3622 3' -51.8 NC_001650.1 + 156438 0.67 0.983253
Target:  5'- -gGGCCgUGcAGCUcgGGCGUgagccUGGGGGCa -3'
miRNA:   3'- uaCUGGaAUuUUGA--CCGUA-----GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 131098 0.67 0.98142
Target:  5'- -gGACCcgcucgugGGUcUCGGGGGCg -3'
miRNA:   3'- uaCUGGaauuuugaCCGuAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 30449 0.67 0.981207
Target:  5'- gGUGGCCUuucUGGGGC-GGCucaGGGGGg -3'
miRNA:   3'- -UACUGGA---AUUUUGaCCGuagCCCCCg -5'
3622 3' -51.8 NC_001650.1 + 130652 0.67 0.978979
Target:  5'- -aGACCcugGAGGCcaggagGGuCAcCGGGGGCa -3'
miRNA:   3'- uaCUGGaa-UUUUGa-----CC-GUaGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 180370 0.67 0.976561
Target:  5'- cUGGCCcUGAAAaaGGUgaggAUgGGGGGCu -3'
miRNA:   3'- uACUGGaAUUUUgaCCG----UAgCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 13663 0.67 0.976561
Target:  5'- cUGGCCcUGAAAaaGGUgaggAUgGGGGGCu -3'
miRNA:   3'- uACUGGaAUUUUgaCCG----UAgCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 158685 0.67 0.976561
Target:  5'- cUGACCUcgggggccaggaUAAAGuggagcagcCUGaGC-UCGGGGGCg -3'
miRNA:   3'- uACUGGA------------AUUUU---------GAC-CGuAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 82523 0.67 0.976561
Target:  5'- -aGACCUcgUAGug--GGCGaaCGGGGGCg -3'
miRNA:   3'- uaCUGGA--AUUuugaCCGUa-GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 12200 0.67 0.975016
Target:  5'- -aGGCCggugGuuGCUGGCuUCcaucaaaucaugcagGGGGGCg -3'
miRNA:   3'- uaCUGGaa--UuuUGACCGuAG---------------CCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 178907 0.67 0.975016
Target:  5'- -aGGCCggugGuuGCUGGCuUCcaucaaaucaugcagGGGGGCg -3'
miRNA:   3'- uaCUGGaa--UuuUGACCGuAG---------------CCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 99272 0.67 0.975016
Target:  5'- -gGACUgccaGAGGCUGGCAUCcGugcugcagagggacaGGGGCg -3'
miRNA:   3'- uaCUGGaa--UUUUGACCGUAG-C---------------CCCCG- -5'
3622 3' -51.8 NC_001650.1 + 58373 0.67 0.973945
Target:  5'- gGUGAaa-UGGGGCUcgGGCAggcucUCGGGGGCc -3'
miRNA:   3'- -UACUggaAUUUUGA--CCGU-----AGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 92896 0.67 0.973672
Target:  5'- uAUGACCUcAGAcucuaaggugcggGCgauagugGGCAggaucCGGGGGCu -3'
miRNA:   3'- -UACUGGAaUUU-------------UGa------CCGUa----GCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 155873 0.68 0.971124
Target:  5'- cUGGCCUcgucccGGGACgGGC--UGGGGGCg -3'
miRNA:   3'- uACUGGAa-----UUUUGaCCGuaGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 110902 0.68 0.971124
Target:  5'- cUGGCCUgcccGCUgggucccgguccGGCAUCgcccgaGGGGGCg -3'
miRNA:   3'- uACUGGAauuuUGA------------CCGUAG------CCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 74627 0.68 0.971124
Target:  5'- -aGGCgggagAAGACcagGGUGUCGGGGGUg -3'
miRNA:   3'- uaCUGgaa--UUUUGa--CCGUAGCCCCCG- -5'
3622 3' -51.8 NC_001650.1 + 166120 0.68 0.971124
Target:  5'- uUGACCUUuacacaGGGGCccacaGGCcgCGGGuGGCa -3'
miRNA:   3'- uACUGGAA------UUUUGa----CCGuaGCCC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.