miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3622 5' -54.7 NC_001650.1 + 3925 0.79 0.365215
Target:  5'- gCCGCCGcUCCGuuaAUGUCUGCCAGgCa -3'
miRNA:   3'- -GGCGGCaGGGUua-UACAGACGGUCgG- -5'
3622 5' -54.7 NC_001650.1 + 138757 0.68 0.906417
Target:  5'- uCUGCCagcauggCCCc---UGUCUGCCAGCa -3'
miRNA:   3'- -GGCGGca-----GGGuuauACAGACGGUCGg -5'
3622 5' -54.7 NC_001650.1 + 74831 0.67 0.943421
Target:  5'- cCUGCUG-CCCAAcucccUGgcaggcucCUGCCGGCCa -3'
miRNA:   3'- -GGCGGCaGGGUUau---ACa-------GACGGUCGG- -5'
3622 5' -54.7 NC_001650.1 + 101256 0.66 0.959494
Target:  5'- gCUGCUGcUCCCAGauaaacAUGcccuacgaucUCUGCCAGCa -3'
miRNA:   3'- -GGCGGC-AGGGUUa-----UAC----------AGACGGUCGg -5'
3622 5' -54.7 NC_001650.1 + 75709 0.66 0.959494
Target:  5'- gCGCCGUCagcgCCAGcGUGUUgggGCUcgucgGGCCg -3'
miRNA:   3'- gGCGGCAG----GGUUaUACAGa--CGG-----UCGG- -5'
3622 5' -54.7 NC_001650.1 + 61234 0.66 0.961943
Target:  5'- cCCGcCCGUCCCcggccacguggaggGcgGUGgcCUGCucCAGCCg -3'
miRNA:   3'- -GGC-GGCAGGG--------------UuaUACa-GACG--GUCGG- -5'
3622 5' -54.7 NC_001650.1 + 834 0.66 0.962623
Target:  5'- aCCGCaccccCCCGGg--GUCUGCCuggcaacAGCCu -3'
miRNA:   3'- -GGCGgca--GGGUUauaCAGACGG-------UCGG- -5'
3622 5' -54.7 NC_001650.1 + 167541 0.66 0.962623
Target:  5'- aCCGCaccccCCCGGg--GUCUGCCuggcaacAGCCu -3'
miRNA:   3'- -GGCGgca--GGGUUauaCAGACGG-------UCGG- -5'
3622 5' -54.7 NC_001650.1 + 155079 0.66 0.969261
Target:  5'- cCUGCCGUCCC----UGga-GCaCAGCCc -3'
miRNA:   3'- -GGCGGCAGGGuuauACagaCG-GUCGG- -5'
3622 5' -54.7 NC_001650.1 + 138663 0.68 0.906417
Target:  5'- uCUGCCagcauggCCCc---UGUCUGCCAGCa -3'
miRNA:   3'- -GGCGGca-----GGGuuauACAGACGGUCGg -5'
3622 5' -54.7 NC_001650.1 + 170423 0.69 0.880208
Target:  5'- gCCGCCauGUUCUAA-AUGcCUGCCAGgCa -3'
miRNA:   3'- -GGCGG--CAGGGUUaUACaGACGGUCgG- -5'
3622 5' -54.7 NC_001650.1 + 170632 0.76 0.535409
Target:  5'- gCCGCCGcUCCGuuaAUGUCUGCCAGg- -3'
miRNA:   3'- -GGCGGCaGGGUua-UACAGACGGUCgg -5'
3622 5' -54.7 NC_001650.1 + 33881 0.75 0.595141
Target:  5'- gUGCUGUCCaccucucaGGUGgagGUCUGCCAGCa -3'
miRNA:   3'- gGCGGCAGGg-------UUAUa--CAGACGGUCGg -5'
3622 5' -54.7 NC_001650.1 + 107644 0.7 0.834542
Target:  5'- uCUGCUGaCUC--UAUGcCUGCCGGCCa -3'
miRNA:   3'- -GGCGGCaGGGuuAUACaGACGGUCGG- -5'
3622 5' -54.7 NC_001650.1 + 73970 0.7 0.842642
Target:  5'- -gGCCuuUCCCAcccuuUCUGCCAGCCa -3'
miRNA:   3'- ggCGGc-AGGGUuauacAGACGGUCGG- -5'
3622 5' -54.7 NC_001650.1 + 138713 0.7 0.858274
Target:  5'- gCCcCUGUCuCCAgcAUGgccccUGUCUGCCAGCa -3'
miRNA:   3'- -GGcGGCAG-GGU--UAU-----ACAGACGGUCGg -5'
3622 5' -54.7 NC_001650.1 + 142891 0.69 0.865792
Target:  5'- gCCGCCGcCCCGGcccGUG-CaGCCGGCg -3'
miRNA:   3'- -GGCGGCaGGGUUa--UACaGaCGGUCGg -5'
3622 5' -54.7 NC_001650.1 + 137272 0.69 0.873106
Target:  5'- aCCGCCGUCCCGGg----CUGgCAGa- -3'
miRNA:   3'- -GGCGGCAGGGUUauacaGACgGUCgg -5'
3622 5' -54.7 NC_001650.1 + 3716 0.69 0.880208
Target:  5'- gCCGCCauGUUCUAA-AUGcCUGCCAGgCa -3'
miRNA:   3'- -GGCGG--CAGGGUUaUACaGACGGUCgG- -5'
3622 5' -54.7 NC_001650.1 + 41208 0.66 0.959494
Target:  5'- aCCGCCGUCCaagacaccaugCAGcUGUGUagUUGCCuaggAGCUg -3'
miRNA:   3'- -GGCGGCAGG-----------GUU-AUACA--GACGG----UCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.