miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3622 5' -54.7 NC_001650.1 + 170423 0.69 0.880208
Target:  5'- gCCGCCauGUUCUAA-AUGcCUGCCAGgCa -3'
miRNA:   3'- -GGCGG--CAGGGUUaUACaGACGGUCgG- -5'
3622 5' -54.7 NC_001650.1 + 25331 0.69 0.8781
Target:  5'- uCUGCCGUCCCGGgagcagaucCCGGCCa -3'
miRNA:   3'- -GGCGGCAGGGUUauacagac-GGUCGG- -5'
3622 5' -54.7 NC_001650.1 + 137272 0.69 0.873106
Target:  5'- aCCGCCGUCCCGGg----CUGgCAGa- -3'
miRNA:   3'- -GGCGGCAGGGUUauacaGACgGUCgg -5'
3622 5' -54.7 NC_001650.1 + 142891 0.69 0.865792
Target:  5'- gCCGCCGcCCCGGcccGUG-CaGCCGGCg -3'
miRNA:   3'- -GGCGGCaGGGUUa--UACaGaCGGUCGg -5'
3622 5' -54.7 NC_001650.1 + 138713 0.7 0.858274
Target:  5'- gCCcCUGUCuCCAgcAUGgccccUGUCUGCCAGCa -3'
miRNA:   3'- -GGcGGCAG-GGU--UAU-----ACAGACGGUCGg -5'
3622 5' -54.7 NC_001650.1 + 73970 0.7 0.842642
Target:  5'- -gGCCuuUCCCAcccuuUCUGCCAGCCa -3'
miRNA:   3'- ggCGGc-AGGGUuauacAGACGGUCGG- -5'
3622 5' -54.7 NC_001650.1 + 107644 0.7 0.834542
Target:  5'- uCUGCUGaCUC--UAUGcCUGCCGGCCa -3'
miRNA:   3'- -GGCGGCaGGGuuAUACaGACGGUCGG- -5'
3622 5' -54.7 NC_001650.1 + 27690 0.71 0.800417
Target:  5'- gCCGCCGcCCCGGUuggagGcCUGCUucuggacccgGGCCa -3'
miRNA:   3'- -GGCGGCaGGGUUAua---CaGACGG----------UCGG- -5'
3622 5' -54.7 NC_001650.1 + 132356 0.71 0.798644
Target:  5'- cCCGCCGgccucgguggggCCCAggGUGUaguagCUGCCGGUg -3'
miRNA:   3'- -GGCGGCa-----------GGGUuaUACA-----GACGGUCGg -5'
3622 5' -54.7 NC_001650.1 + 31614 0.72 0.725581
Target:  5'- cCCGCCcguggGUCUCuAUGcaGUCUGUCAGCCu -3'
miRNA:   3'- -GGCGG-----CAGGGuUAUa-CAGACGGUCGG- -5'
3622 5' -54.7 NC_001650.1 + 69091 0.74 0.645692
Target:  5'- -gGCCGUCUaCAggaucaccAUGUGUCUGgCGGCCa -3'
miRNA:   3'- ggCGGCAGG-GU--------UAUACAGACgGUCGG- -5'
3622 5' -54.7 NC_001650.1 + 33881 0.75 0.595141
Target:  5'- gUGCUGUCCaccucucaGGUGgagGUCUGCCAGCa -3'
miRNA:   3'- gGCGGCAGGg-------UUAUa--CAGACGGUCGg -5'
3622 5' -54.7 NC_001650.1 + 170632 0.76 0.535409
Target:  5'- gCCGCCGcUCCGuuaAUGUCUGCCAGg- -3'
miRNA:   3'- -GGCGGCaGGGUua-UACAGACGGUCgg -5'
3622 5' -54.7 NC_001650.1 + 3925 0.79 0.365215
Target:  5'- gCCGCCGcUCCGuuaAUGUCUGCCAGgCa -3'
miRNA:   3'- -GGCGGCaGGGUua-UACAGACGGUCgG- -5'
3622 5' -54.7 NC_001650.1 + 37438 0.97 0.031007
Target:  5'- cCCGCCuG-CCCAAUAUGUCUGCCAGCCc -3'
miRNA:   3'- -GGCGG-CaGGGUUAUACAGACGGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.