miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3624 3' -48.8 NC_001650.1 + 57840 0.66 0.999296
Target:  5'- gGGCGGUGGCAGcggcacguagggcAGGUACUGGGc- -3'
miRNA:   3'- -UCGCCGCUGUCaaa----------UUCGUGACUUac -5'
3624 3' -48.8 NC_001650.1 + 121815 0.66 0.999281
Target:  5'- gAGCGGCGGgGGcaacggGGGCGCgGGAa- -3'
miRNA:   3'- -UCGCCGCUgUCaaa---UUCGUGaCUUac -5'
3624 3' -48.8 NC_001650.1 + 133953 0.66 0.999281
Target:  5'- aGGCGGCcGCAGUgcccgcgGAGCAUaaaagUGAAa- -3'
miRNA:   3'- -UCGCCGcUGUCAaa-----UUCGUG-----ACUUac -5'
3624 3' -48.8 NC_001650.1 + 69133 0.66 0.999281
Target:  5'- gGGgGGCGGCGua--GAGCGCUGGuacGUGu -3'
miRNA:   3'- -UCgCCGCUGUcaaaUUCGUGACU---UAC- -5'
3624 3' -48.8 NC_001650.1 + 136709 0.66 0.999114
Target:  5'- cGGCGGCGACcuucuuGGcggGGGCgaaGCUGAcgGg -3'
miRNA:   3'- -UCGCCGCUG------UCaaaUUCG---UGACUuaC- -5'
3624 3' -48.8 NC_001650.1 + 52786 0.66 0.998999
Target:  5'- cGGCGGCGGCGGcccucggggcccGGGCGCagGAcgGg -3'
miRNA:   3'- -UCGCCGCUGUCaaa---------UUCGUGa-CUuaC- -5'
3624 3' -48.8 NC_001650.1 + 143571 0.66 0.998915
Target:  5'- aGGgGGCGAgGGUgaGGGCgaggGCUGggUa -3'
miRNA:   3'- -UCgCCGCUgUCAaaUUCG----UGACuuAc -5'
3624 3' -48.8 NC_001650.1 + 114422 0.66 0.998915
Target:  5'- cGCGGCGGCGGgcUuuGCcUUGGcgGg -3'
miRNA:   3'- uCGCCGCUGUCaaAuuCGuGACUuaC- -5'
3624 3' -48.8 NC_001650.1 + 117826 0.67 0.99868
Target:  5'- gAGCGGuCGGCGGgcaUAGGCguccagggGCUGGcgGa -3'
miRNA:   3'- -UCGCC-GCUGUCaa-AUUCG--------UGACUuaC- -5'
3624 3' -48.8 NC_001650.1 + 134276 0.67 0.998402
Target:  5'- uGGUGGUGAUGGUUguGGUugUGGGg- -3'
miRNA:   3'- -UCGCCGCUGUCAAauUCGugACUUac -5'
3624 3' -48.8 NC_001650.1 + 106838 0.67 0.998077
Target:  5'- uGGaCGGUG-CAGgggUGGGCGCUGGGg- -3'
miRNA:   3'- -UC-GCCGCuGUCaa-AUUCGUGACUUac -5'
3624 3' -48.8 NC_001650.1 + 117685 0.67 0.997697
Target:  5'- cAGCuGGUGACGGUgggGGGCGCUc---- -3'
miRNA:   3'- -UCG-CCGCUGUCAaa-UUCGUGAcuuac -5'
3624 3' -48.8 NC_001650.1 + 77945 0.67 0.997697
Target:  5'- gAGCGGgGGCGGcugcgAGGCACcGAggGg -3'
miRNA:   3'- -UCGCCgCUGUCaaa--UUCGUGaCUuaC- -5'
3624 3' -48.8 NC_001650.1 + 38487 0.67 0.997257
Target:  5'- cGUGGgauggagacUGAUAGUUUAGGCACUuGAAUu -3'
miRNA:   3'- uCGCC---------GCUGUCAAAUUCGUGA-CUUAc -5'
3624 3' -48.8 NC_001650.1 + 47663 0.68 0.996749
Target:  5'- gGGgGGCGAgGGUgaGAGC-CUGGAc- -3'
miRNA:   3'- -UCgCCGCUgUCAaaUUCGuGACUUac -5'
3624 3' -48.8 NC_001650.1 + 93057 0.68 0.996749
Target:  5'- cGGCGGgGGCGGguaaGAGCACUa---- -3'
miRNA:   3'- -UCGCCgCUGUCaaa-UUCGUGAcuuac -5'
3624 3' -48.8 NC_001650.1 + 129557 0.68 0.996749
Target:  5'- aAGCGGCGGgGGcUgcAGUGCUGGGg- -3'
miRNA:   3'- -UCGCCGCUgUCaAauUCGUGACUUac -5'
3624 3' -48.8 NC_001650.1 + 158917 0.68 0.996228
Target:  5'- cGUGGCGAUAGgggaugcccggcAGCAgCUGggUGa -3'
miRNA:   3'- uCGCCGCUGUCaaau--------UCGU-GACuuAC- -5'
3624 3' -48.8 NC_001650.1 + 150981 0.68 0.996166
Target:  5'- cGGUGGCGGCGGUgguGGCgGCgGAGg- -3'
miRNA:   3'- -UCGCCGCUGUCAaauUCG-UGaCUUac -5'
3624 3' -48.8 NC_001650.1 + 38745 0.68 0.996166
Target:  5'- cGGaaGCGAUAGUUUAAGCACcuuuuAUGa -3'
miRNA:   3'- -UCgcCGCUGUCAAAUUCGUGacu--UAC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.