Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3624 | 3' | -48.8 | NC_001650.1 | + | 38621 | 1.09 | 0.015536 |
Target: 5'- cAGCGGCGACAGUUUAAGCACUGAAUGu -3' miRNA: 3'- -UCGCCGCUGUCAAAUUCGUGACUUAC- -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 158257 | 0.71 | 0.966147 |
Target: 5'- gGGCuGGCGGCcGUggAGGC-CUGGAUGc -3' miRNA: 3'- -UCG-CCGCUGuCAaaUUCGuGACUUAC- -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 38369 | 0.71 | 0.96938 |
Target: 5'- cGGgGuGUGAUAGUUUuGGCaACUGAGUGa -3' miRNA: 3'- -UCgC-CGCUGUCAAAuUCG-UGACUUAC- -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 88641 | 0.71 | 0.96938 |
Target: 5'- cGGCGGCGACGGgg-GAGaGgaGggUGa -3' miRNA: 3'- -UCGCCGCUGUCaaaUUCgUgaCuuAC- -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 111081 | 0.7 | 0.980126 |
Target: 5'- cGGCGGCGAUAGg---GGCccguaGCUGAAa- -3' miRNA: 3'- -UCGCCGCUGUCaaauUCG-----UGACUUac -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 116761 | 0.7 | 0.9843 |
Target: 5'- cAGCGGCGGgGGacuc-GCACUGAGc- -3' miRNA: 3'- -UCGCCGCUgUCaaauuCGUGACUUac -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 91556 | 0.7 | 0.9843 |
Target: 5'- aGGCGGCGuGCAGgcUGAG-GCUGGAg- -3' miRNA: 3'- -UCGCCGC-UGUCaaAUUCgUGACUUac -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 109267 | 0.7 | 0.98612 |
Target: 5'- gGGUGGCGAUAGUgggGGGCGCc----- -3' miRNA: 3'- -UCGCCGCUGUCAaa-UUCGUGacuuac -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 58959 | 0.7 | 0.98612 |
Target: 5'- aGGCGGCGGCGGcuucuGGCACgGGc-- -3' miRNA: 3'- -UCGCCGCUGUCaaau-UCGUGaCUuac -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 46936 | 0.69 | 0.98927 |
Target: 5'- cGCGGUGGCAGU---AGC-CUGGggGa -3' miRNA: 3'- uCGCCGCUGUCAaauUCGuGACUuaC- -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 93341 | 0.69 | 0.99062 |
Target: 5'- cAGCGGgGcCAGUacGAGCACcUGAcgGg -3' miRNA: 3'- -UCGCCgCuGUCAaaUUCGUG-ACUuaC- -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 142710 | 0.69 | 0.991833 |
Target: 5'- gAGCGGCGGCGGcggcGGCGCggccGAGa- -3' miRNA: 3'- -UCGCCGCUGUCaaauUCGUGa---CUUac -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 75516 | 0.69 | 0.991833 |
Target: 5'- cGCGGCcGCAGgg-GGGCGCUGu--- -3' miRNA: 3'- uCGCCGcUGUCaaaUUCGUGACuuac -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 140394 | 0.69 | 0.992918 |
Target: 5'- aAGCGGCuuuCGGguuuugGGGCGCUGAAa- -3' miRNA: 3'- -UCGCCGcu-GUCaaa---UUCGUGACUUac -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 78906 | 0.68 | 0.993884 |
Target: 5'- cAGCGGgGACGGg--AGGCGCUuGGucuuuGUGg -3' miRNA: 3'- -UCGCCgCUGUCaaaUUCGUGA-CU-----UAC- -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 95628 | 0.68 | 0.993884 |
Target: 5'- cGGCGGCGGCAGc---GGCGCgcaaagggGAAg- -3' miRNA: 3'- -UCGCCGCUGUCaaauUCGUGa-------CUUac -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 82961 | 0.68 | 0.9955 |
Target: 5'- --aGGCGGCAGaccAGGCACUGucUGg -3' miRNA: 3'- ucgCCGCUGUCaaaUUCGUGACuuAC- -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 38745 | 0.68 | 0.996166 |
Target: 5'- cGGaaGCGAUAGUUUAAGCACcuuuuAUGa -3' miRNA: 3'- -UCgcCGCUGUCAAAUUCGUGacu--UAC- -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 150981 | 0.68 | 0.996166 |
Target: 5'- cGGUGGCGGCGGUgguGGCgGCgGAGg- -3' miRNA: 3'- -UCGCCGCUGUCAaauUCG-UGaCUUac -5' |
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3624 | 3' | -48.8 | NC_001650.1 | + | 158917 | 0.68 | 0.996228 |
Target: 5'- cGUGGCGAUAGgggaugcccggcAGCAgCUGggUGa -3' miRNA: 3'- uCGCCGCUGUCaaau--------UCGU-GACuuAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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