miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3624 3' -48.8 NC_001650.1 + 82961 0.68 0.9955
Target:  5'- --aGGCGGCAGaccAGGCACUGucUGg -3'
miRNA:   3'- ucgCCGCUGUCaaaUUCGUGACuuAC- -5'
3624 3' -48.8 NC_001650.1 + 95628 0.68 0.993884
Target:  5'- cGGCGGCGGCAGc---GGCGCgcaaagggGAAg- -3'
miRNA:   3'- -UCGCCGCUGUCaaauUCGUGa-------CUUac -5'
3624 3' -48.8 NC_001650.1 + 78906 0.68 0.993884
Target:  5'- cAGCGGgGACGGg--AGGCGCUuGGucuuuGUGg -3'
miRNA:   3'- -UCGCCgCUGUCaaaUUCGUGA-CU-----UAC- -5'
3624 3' -48.8 NC_001650.1 + 140394 0.69 0.992918
Target:  5'- aAGCGGCuuuCGGguuuugGGGCGCUGAAa- -3'
miRNA:   3'- -UCGCCGcu-GUCaaa---UUCGUGACUUac -5'
3624 3' -48.8 NC_001650.1 + 142710 0.69 0.991833
Target:  5'- gAGCGGCGGCGGcggcGGCGCggccGAGa- -3'
miRNA:   3'- -UCGCCGCUGUCaaauUCGUGa---CUUac -5'
3624 3' -48.8 NC_001650.1 + 75516 0.69 0.991833
Target:  5'- cGCGGCcGCAGgg-GGGCGCUGu--- -3'
miRNA:   3'- uCGCCGcUGUCaaaUUCGUGACuuac -5'
3624 3' -48.8 NC_001650.1 + 93341 0.69 0.99062
Target:  5'- cAGCGGgGcCAGUacGAGCACcUGAcgGg -3'
miRNA:   3'- -UCGCCgCuGUCAaaUUCGUG-ACUuaC- -5'
3624 3' -48.8 NC_001650.1 + 46936 0.69 0.98927
Target:  5'- cGCGGUGGCAGU---AGC-CUGGggGa -3'
miRNA:   3'- uCGCCGCUGUCAaauUCGuGACUuaC- -5'
3624 3' -48.8 NC_001650.1 + 58959 0.7 0.98612
Target:  5'- aGGCGGCGGCGGcuucuGGCACgGGc-- -3'
miRNA:   3'- -UCGCCGCUGUCaaau-UCGUGaCUuac -5'
3624 3' -48.8 NC_001650.1 + 109267 0.7 0.98612
Target:  5'- gGGUGGCGAUAGUgggGGGCGCc----- -3'
miRNA:   3'- -UCGCCGCUGUCAaa-UUCGUGacuuac -5'
3624 3' -48.8 NC_001650.1 + 91556 0.7 0.9843
Target:  5'- aGGCGGCGuGCAGgcUGAG-GCUGGAg- -3'
miRNA:   3'- -UCGCCGC-UGUCaaAUUCgUGACUUac -5'
3624 3' -48.8 NC_001650.1 + 116761 0.7 0.9843
Target:  5'- cAGCGGCGGgGGacuc-GCACUGAGc- -3'
miRNA:   3'- -UCGCCGCUgUCaaauuCGUGACUUac -5'
3624 3' -48.8 NC_001650.1 + 111081 0.7 0.980126
Target:  5'- cGGCGGCGAUAGg---GGCccguaGCUGAAa- -3'
miRNA:   3'- -UCGCCGCUGUCaaauUCG-----UGACUUac -5'
3624 3' -48.8 NC_001650.1 + 88641 0.71 0.96938
Target:  5'- cGGCGGCGACGGgg-GAGaGgaGggUGa -3'
miRNA:   3'- -UCGCCGCUGUCaaaUUCgUgaCuuAC- -5'
3624 3' -48.8 NC_001650.1 + 38369 0.71 0.96938
Target:  5'- cGGgGuGUGAUAGUUUuGGCaACUGAGUGa -3'
miRNA:   3'- -UCgC-CGCUGUCAAAuUCG-UGACUUAC- -5'
3624 3' -48.8 NC_001650.1 + 158257 0.71 0.966147
Target:  5'- gGGCuGGCGGCcGUggAGGC-CUGGAUGc -3'
miRNA:   3'- -UCG-CCGCUGuCAaaUUCGuGACUUAC- -5'
3624 3' -48.8 NC_001650.1 + 38621 1.09 0.015536
Target:  5'- cAGCGGCGACAGUUUAAGCACUGAAUGu -3'
miRNA:   3'- -UCGCCGCUGUCAAAUUCGUGACUUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.