miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3625 3' -42.6 NC_001650.1 + 132890 0.66 1
Target:  5'- gGGAGGUGGUGGaggcgguGGCGCCc---- -3'
miRNA:   3'- -CCUUCGCUAUCaaau---UCGUGGaaaag -5'
3625 3' -42.6 NC_001650.1 + 122792 0.68 1
Target:  5'- cGAGGCGGUGGUgcgcaAGGUGCUggagUUCu -3'
miRNA:   3'- cCUUCGCUAUCAaa---UUCGUGGaa--AAG- -5'
3625 3' -42.6 NC_001650.1 + 131105 0.68 1
Target:  5'- gGGAGGCGAggggAGUcccuccgGGGCGCCc---- -3'
miRNA:   3'- -CCUUCGCUa---UCAaa-----UUCGUGGaaaag -5'
3625 3' -42.6 NC_001650.1 + 151347 0.68 1
Target:  5'- aGGAGGUGGUGGag-GAGgAUCUUUa- -3'
miRNA:   3'- -CCUUCGCUAUCaaaUUCgUGGAAAag -5'
3625 3' -42.6 NC_001650.1 + 154506 0.68 1
Target:  5'- gGGGAGCaGAUGGgcauguAGUACCUg--- -3'
miRNA:   3'- -CCUUCG-CUAUCaaau--UCGUGGAaaag -5'
3625 3' -42.6 NC_001650.1 + 71792 0.67 1
Target:  5'- aGAGGUGGUGcagcaGAGCGCCUUUg- -3'
miRNA:   3'- cCUUCGCUAUcaaa-UUCGUGGAAAag -5'
3625 3' -42.6 NC_001650.1 + 93721 0.67 1
Target:  5'- -cAAGCGGUgcacggacccagAGUUcGGGCACCUgcUCa -3'
miRNA:   3'- ccUUCGCUA------------UCAAaUUCGUGGAaaAG- -5'
3625 3' -42.6 NC_001650.1 + 159613 0.67 1
Target:  5'- cGGggGCGGUGGgcaagGGGgACCc---- -3'
miRNA:   3'- -CCuuCGCUAUCaaa--UUCgUGGaaaag -5'
3625 3' -42.6 NC_001650.1 + 18617 0.66 1
Target:  5'- uGGAGGagaGAgAGaaaUAAGCACCUUUa- -3'
miRNA:   3'- -CCUUCg--CUaUCaa-AUUCGUGGAAAag -5'
3625 3' -42.6 NC_001650.1 + 106979 0.68 1
Target:  5'- cGGAGGCGAU-GUUcUGAGC-CCa---- -3'
miRNA:   3'- -CCUUCGCUAuCAA-AUUCGuGGaaaag -5'
3625 3' -42.6 NC_001650.1 + 82394 0.68 1
Target:  5'- gGGAGGCGGUGGcc-GAGCugGCCa---- -3'
miRNA:   3'- -CCUUCGCUAUCaaaUUCG--UGGaaaag -5'
3625 3' -42.6 NC_001650.1 + 22362 0.68 1
Target:  5'- uGGggGUGGUGGgcagcgggGAGgACCcgUUCg -3'
miRNA:   3'- -CCuuCGCUAUCaaa-----UUCgUGGaaAAG- -5'
3625 3' -42.6 NC_001650.1 + 91051 0.66 1
Target:  5'- uGGggGCGGUGGggUAcuccuucuugGGCACg----- -3'
miRNA:   3'- -CCuuCGCUAUCaaAU----------UCGUGgaaaag -5'
3625 3' -42.6 NC_001650.1 + 26684 0.66 1
Target:  5'- gGGAGGUGAUAGUgUucGCgaacgccGCCUgcUUCa -3'
miRNA:   3'- -CCUUCGCUAUCAaAuuCG-------UGGAa-AAG- -5'
3625 3' -42.6 NC_001650.1 + 61520 0.66 1
Target:  5'- cGGggGCGu--------GUACCUUUUCa -3'
miRNA:   3'- -CCuuCGCuaucaaauuCGUGGAAAAG- -5'
3625 3' -42.6 NC_001650.1 + 132286 0.66 1
Target:  5'- aGGggGCGAgauagaccUGGU---GGCGCCg---- -3'
miRNA:   3'- -CCuuCGCU--------AUCAaauUCGUGGaaaag -5'
3625 3' -42.6 NC_001650.1 + 148874 0.66 1
Target:  5'- uGGggGCGGUAaccgUGAGUACUg---- -3'
miRNA:   3'- -CCuuCGCUAUcaa-AUUCGUGGaaaag -5'
3625 3' -42.6 NC_001650.1 + 77300 0.68 1
Target:  5'- uGGggGCacacGUAGUUgaccacguUGAGCAUUUUUUCc -3'
miRNA:   3'- -CCuuCGc---UAUCAA--------AUUCGUGGAAAAG- -5'
3625 3' -42.6 NC_001650.1 + 75431 0.68 1
Target:  5'- gGGggGCGGgcgAGgaagcGAGCGCCg---- -3'
miRNA:   3'- -CCuuCGCUa--UCaaa--UUCGUGGaaaag -5'
3625 3' -42.6 NC_001650.1 + 128326 0.68 1
Target:  5'- cGGAGGCGGUGGgcgAGGUgaugggggACCUg--- -3'
miRNA:   3'- -CCUUCGCUAUCaaaUUCG--------UGGAaaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.