miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3625 3' -42.6 NC_001650.1 + 128326 0.68 1
Target:  5'- cGGAGGCGGUGGgcgAGGUgaugggggACCUg--- -3'
miRNA:   3'- -CCUUCGCUAUCaaaUUCG--------UGGAaaag -5'
3625 3' -42.6 NC_001650.1 + 22362 0.68 1
Target:  5'- uGGggGUGGUGGgcagcgggGAGgACCcgUUCg -3'
miRNA:   3'- -CCuuCGCUAUCaaa-----UUCgUGGaaAAG- -5'
3625 3' -42.6 NC_001650.1 + 82394 0.68 1
Target:  5'- gGGAGGCGGUGGcc-GAGCugGCCa---- -3'
miRNA:   3'- -CCUUCGCUAUCaaaUUCG--UGGaaaag -5'
3625 3' -42.6 NC_001650.1 + 106979 0.68 1
Target:  5'- cGGAGGCGAU-GUUcUGAGC-CCa---- -3'
miRNA:   3'- -CCUUCGCUAuCAA-AUUCGuGGaaaag -5'
3625 3' -42.6 NC_001650.1 + 154506 0.68 1
Target:  5'- gGGGAGCaGAUGGgcauguAGUACCUg--- -3'
miRNA:   3'- -CCUUCG-CUAUCaaau--UCGUGGAaaag -5'
3625 3' -42.6 NC_001650.1 + 70655 0.67 1
Target:  5'- cGGAGGUGAUGGUcUUAAcCGCCc---- -3'
miRNA:   3'- -CCUUCGCUAUCA-AAUUcGUGGaaaag -5'
3625 3' -42.6 NC_001650.1 + 151347 0.68 1
Target:  5'- aGGAGGUGGUGGag-GAGgAUCUUUa- -3'
miRNA:   3'- -CCUUCGCUAUCaaaUUCgUGGAAAag -5'
3625 3' -42.6 NC_001650.1 + 131105 0.68 1
Target:  5'- gGGAGGCGAggggAGUcccuccgGGGCGCCc---- -3'
miRNA:   3'- -CCUUCGCUa---UCAaa-----UUCGUGGaaaag -5'
3625 3' -42.6 NC_001650.1 + 122792 0.68 1
Target:  5'- cGAGGCGGUGGUgcgcaAGGUGCUggagUUCu -3'
miRNA:   3'- cCUUCGCUAUCAaa---UUCGUGGaa--AAG- -5'
3625 3' -42.6 NC_001650.1 + 82722 0.69 0.999999
Target:  5'- aGggGCGGUGGaugacgcGGGCGCCUacgUCu -3'
miRNA:   3'- cCuuCGCUAUCaaa----UUCGUGGAaa-AG- -5'
3625 3' -42.6 NC_001650.1 + 152876 0.69 0.999997
Target:  5'- uGGAAGUGGUAGUggu-GCugCUc--- -3'
miRNA:   3'- -CCUUCGCUAUCAaauuCGugGAaaag -5'
3625 3' -42.6 NC_001650.1 + 92252 0.7 0.999996
Target:  5'- -aAGGCGGUGGUgggcAGCACCUc--- -3'
miRNA:   3'- ccUUCGCUAUCAaau-UCGUGGAaaag -5'
3625 3' -42.6 NC_001650.1 + 118679 0.7 0.999991
Target:  5'- aGGGAGgGGUAGgcgAAGCACUg---- -3'
miRNA:   3'- -CCUUCgCUAUCaaaUUCGUGGaaaag -5'
3625 3' -42.6 NC_001650.1 + 38618 0.7 0.999988
Target:  5'- --cGGCGAcAGUUUAAGCACUg---- -3'
miRNA:   3'- ccuUCGCUaUCAAAUUCGUGGaaaag -5'
3625 3' -42.6 NC_001650.1 + 135120 0.71 0.999955
Target:  5'- uGGggGUGAggAGgaagAAGCACCUgggCg -3'
miRNA:   3'- -CCuuCGCUa-UCaaa-UUCGUGGAaaaG- -5'
3625 3' -42.6 NC_001650.1 + 182317 0.72 0.999918
Target:  5'- aGGAGCGAUAca--GAGUACCUUUUa -3'
miRNA:   3'- cCUUCGCUAUcaaaUUCGUGGAAAAg -5'
3625 3' -42.6 NC_001650.1 + 15610 0.72 0.999918
Target:  5'- aGGAGCGAUAca--GAGUACCUUUUa -3'
miRNA:   3'- cCUUCGCUAUcaaaUUCGUGGAAAAg -5'
3625 3' -42.6 NC_001650.1 + 77119 0.73 0.999691
Target:  5'- aGGugcguGGUGGUGGgggugGAGCACUUUUUCc -3'
miRNA:   3'- -CCu----UCGCUAUCaaa--UUCGUGGAAAAG- -5'
3625 3' -42.6 NC_001650.1 + 34653 0.73 0.999606
Target:  5'- aGGggGUGGUGGguaccAGCGCCUa--- -3'
miRNA:   3'- -CCuuCGCUAUCaaau-UCGUGGAaaag -5'
3625 3' -42.6 NC_001650.1 + 38494 0.74 0.999219
Target:  5'- uGGAGacuGAUAGUUUAGGCACUUgaaUUCu -3'
miRNA:   3'- cCUUCg--CUAUCAAAUUCGUGGAa--AAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.