miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3626 3' -49.8 NC_001650.1 + 18376 0.66 0.999048
Target:  5'- gGCAGAGGAGAaucCCccAACUUagagaGGUGa -3'
miRNA:   3'- aCGUCUUCUCU---GGcuUUGAAg----CCACg -5'
3626 3' -49.8 NC_001650.1 + 136382 0.66 0.999048
Target:  5'- aUGCGGGucGGGGUCGAGGCcgCGGgggGCg -3'
miRNA:   3'- -ACGUCUu-CUCUGGCUUUGaaGCCa--CG- -5'
3626 3' -49.8 NC_001650.1 + 102738 0.66 0.998841
Target:  5'- uUGCuGGuaGGGCUGggGCUgCGGcUGCa -3'
miRNA:   3'- -ACGuCUucUCUGGCuuUGAaGCC-ACG- -5'
3626 3' -49.8 NC_001650.1 + 132717 0.66 0.998841
Target:  5'- aGCAGguGuucGCCGAGuccccgGC-UCGGUGCa -3'
miRNA:   3'- aCGUCuuCuc-UGGCUU------UGaAGCCACG- -5'
3626 3' -49.8 NC_001650.1 + 35643 0.66 0.998841
Target:  5'- cGCGGGAGGuGuACCGGGugUUCGcGUcgaGCc -3'
miRNA:   3'- aCGUCUUCU-C-UGGCUUugAAGC-CA---CG- -5'
3626 3' -49.8 NC_001650.1 + 68230 0.66 0.998841
Target:  5'- gGguGGAGAcGGCCGAGGggaagUUGGUGg -3'
miRNA:   3'- aCguCUUCU-CUGGCUUUga---AGCCACg -5'
3626 3' -49.8 NC_001650.1 + 157397 0.66 0.998431
Target:  5'- cGCAGAGGGGGUgGAugugcagcggggcauGACgcUGGUGCa -3'
miRNA:   3'- aCGUCUUCUCUGgCU---------------UUGaaGCCACG- -5'
3626 3' -49.8 NC_001650.1 + 126067 0.66 0.998311
Target:  5'- cGCcGAAGAGACgucUGAuGCgagaGGUGCa -3'
miRNA:   3'- aCGuCUUCUCUG---GCUuUGaag-CCACG- -5'
3626 3' -49.8 NC_001650.1 + 155001 0.66 0.997977
Target:  5'- uUGCAGGAuGAGGgCGAGACagaUUUGG-GUa -3'
miRNA:   3'- -ACGUCUU-CUCUgGCUUUG---AAGCCaCG- -5'
3626 3' -49.8 NC_001650.1 + 91200 0.67 0.99759
Target:  5'- gUGCAGGAuGGuGCUGGAGgUgaacCGGUGCg -3'
miRNA:   3'- -ACGUCUUcUC-UGGCUUUgAa---GCCACG- -5'
3626 3' -49.8 NC_001650.1 + 109457 0.67 0.99759
Target:  5'- cUGCGGccugGAGAGGCUGcucAGGCUcuUCGuGUGCc -3'
miRNA:   3'- -ACGUC----UUCUCUGGC---UUUGA--AGC-CACG- -5'
3626 3' -49.8 NC_001650.1 + 69227 0.67 0.99759
Target:  5'- cGCGGGcgcuGGAGGCCGGgggcgaguagAGCggCGGcGCu -3'
miRNA:   3'- aCGUCU----UCUCUGGCU----------UUGaaGCCaCG- -5'
3626 3' -49.8 NC_001650.1 + 66869 0.67 0.99759
Target:  5'- cGCGGGAGGcGCCGggGg--CGGggGCg -3'
miRNA:   3'- aCGUCUUCUcUGGCuuUgaaGCCa-CG- -5'
3626 3' -49.8 NC_001650.1 + 50541 0.67 0.996628
Target:  5'- gGCucGAGGAGGCCGggGCcgggaGGgacgagGCg -3'
miRNA:   3'- aCGu-CUUCUCUGGCuuUGaag--CCa-----CG- -5'
3626 3' -49.8 NC_001650.1 + 27856 0.67 0.996628
Target:  5'- gGCgAGAAgGAGGCCGcguAGGCcaggUGGUGCa -3'
miRNA:   3'- aCG-UCUU-CUCUGGC---UUUGaa--GCCACG- -5'
3626 3' -49.8 NC_001650.1 + 158672 0.67 0.996628
Target:  5'- -aUAGGAGAGGaCGAGAUgagggUGGUGCa -3'
miRNA:   3'- acGUCUUCUCUgGCUUUGaa---GCCACG- -5'
3626 3' -49.8 NC_001650.1 + 71542 0.67 0.996628
Target:  5'- gGCAGAGG-GACCuGAgGGCgcaGGUGUa -3'
miRNA:   3'- aCGUCUUCuCUGG-CU-UUGaagCCACG- -5'
3626 3' -49.8 NC_001650.1 + 50995 0.67 0.996628
Target:  5'- cUGCGGggG-GACgGggGCg-CGG-GCg -3'
miRNA:   3'- -ACGUCuuCuCUGgCuuUGaaGCCaCG- -5'
3626 3' -49.8 NC_001650.1 + 27376 0.67 0.996284
Target:  5'- aGCAGAggguGGAGGCCcuGAcccaguuuaacgccaAGCaggCGGUGCa -3'
miRNA:   3'- aCGUCU----UCUCUGG--CU---------------UUGaa-GCCACG- -5'
3626 3' -49.8 NC_001650.1 + 61346 0.67 0.996039
Target:  5'- gGCGGcGGGGGACCcgGggGCggCGGgggagGCg -3'
miRNA:   3'- aCGUC-UUCUCUGG--CuuUGaaGCCa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.