miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3626 3' -49.8 NC_001650.1 + 124685 0.68 0.99461
Target:  5'- aUGCGGuugGGGGugC-AAGCcUCGGUGUa -3'
miRNA:   3'- -ACGUCu--UCUCugGcUUUGaAGCCACG- -5'
3626 3' -49.8 NC_001650.1 + 155738 0.69 0.984285
Target:  5'- gUGCAGcgc-GGCCaGggGC-UCGGUGCa -3'
miRNA:   3'- -ACGUCuucuCUGG-CuuUGaAGCCACG- -5'
3626 3' -49.8 NC_001650.1 + 126614 0.69 0.984285
Target:  5'- cGCAGggGGGG-CGAAGagggCGGUGg -3'
miRNA:   3'- aCGUCuuCUCUgGCUUUgaa-GCCACg -5'
3626 3' -49.8 NC_001650.1 + 142640 0.68 0.99051
Target:  5'- gGCGGAGGGGGCUGcgGCUgcugCGGc-- -3'
miRNA:   3'- aCGUCUUCUCUGGCuuUGAa---GCCacg -5'
3626 3' -49.8 NC_001650.1 + 39274 0.68 0.99279
Target:  5'- gUGUAGAAGAGAUUGgGAACUUCuGUcGUu -3'
miRNA:   3'- -ACGUCUUCUCUGGC-UUUGAAGcCA-CG- -5'
3626 3' -49.8 NC_001650.1 + 21532 0.68 0.99461
Target:  5'- cUGCuGGGAG-GGCCGcgGCUgCGGUGg -3'
miRNA:   3'- -ACG-UCUUCuCUGGCuuUGAaGCCACg -5'
3626 3' -49.8 NC_001650.1 + 57962 0.68 0.99461
Target:  5'- gGCGGGAGGcgcGGCCGggGCgUCGauggGCu -3'
miRNA:   3'- aCGUCUUCU---CUGGCuuUGaAGCca--CG- -5'
3626 3' -49.8 NC_001650.1 + 132414 0.68 0.99461
Target:  5'- gGCGcGAGGAGGUgGAGGuCUUCGGgagGCa -3'
miRNA:   3'- aCGU-CUUCUCUGgCUUU-GAAGCCa--CG- -5'
3626 3' -49.8 NC_001650.1 + 121206 0.68 0.99461
Target:  5'- gGCGGAcgguGGAGGCCuuc-CUggagCGGUGCc -3'
miRNA:   3'- aCGUCU----UCUCUGGcuuuGAa---GCCACG- -5'
3626 3' -49.8 NC_001650.1 + 119854 0.7 0.980194
Target:  5'- cGCAGAcccugaacagGGAGACCG-GGCUgaagaUGGUGUc -3'
miRNA:   3'- aCGUCU----------UCUCUGGCuUUGAa----GCCACG- -5'
3626 3' -49.8 NC_001650.1 + 51327 0.7 0.980194
Target:  5'- gGCGGucGAGaACCGGAccuGCUUUcugcaGGUGCu -3'
miRNA:   3'- aCGUCuuCUC-UGGCUU---UGAAG-----CCACG- -5'
3626 3' -49.8 NC_001650.1 + 18019 0.7 0.980194
Target:  5'- aGUaugGGGAGAGACUGAGGagg-GGUGCa -3'
miRNA:   3'- aCG---UCUUCUCUGGCUUUgaagCCACG- -5'
3626 3' -49.8 NC_001650.1 + 163161 0.73 0.916208
Target:  5'- cGCGGGAGAGaugauaGCgGggGCaUCGGUGg -3'
miRNA:   3'- aCGUCUUCUC------UGgCuuUGaAGCCACg -5'
3626 3' -49.8 NC_001650.1 + 130761 0.72 0.937996
Target:  5'- gUGgAGAAGAGGCUGggGCcccUGGUGg -3'
miRNA:   3'- -ACgUCUUCUCUGGCuuUGaa-GCCACg -5'
3626 3' -49.8 NC_001650.1 + 60179 0.72 0.942811
Target:  5'- --gGGAGGAGGCCGggGuCUgCGGgcgGCg -3'
miRNA:   3'- acgUCUUCUCUGGCuuU-GAaGCCa--CG- -5'
3626 3' -49.8 NC_001650.1 + 24350 0.72 0.942811
Target:  5'- gGUGGggGAGGCgUGGAGgUcccacUCGGUGCg -3'
miRNA:   3'- aCGUCuuCUCUG-GCUUUgA-----AGCCACG- -5'
3626 3' -49.8 NC_001650.1 + 71729 0.71 0.955767
Target:  5'- gUGCAGggGGGAUCaguuuGAGACggCGGcgUGCc -3'
miRNA:   3'- -ACGUCuuCUCUGG-----CUUUGaaGCC--ACG- -5'
3626 3' -49.8 NC_001650.1 + 79057 0.71 0.959601
Target:  5'- cUGgAGAGGAuagcGGCCGAGGCgUCGG-GCc -3'
miRNA:   3'- -ACgUCUUCU----CUGGCUUUGaAGCCaCG- -5'
3626 3' -49.8 NC_001650.1 + 83926 0.7 0.974025
Target:  5'- cUGguGGAGAgggcucaGACCGAAACcgguuuggggaagUUGGUGCu -3'
miRNA:   3'- -ACguCUUCU-------CUGGCUUUGa------------AGCCACG- -5'
3626 3' -49.8 NC_001650.1 + 26960 0.7 0.977873
Target:  5'- cGUGGggGAGugCGAcgcCUUUaaGGUGCc -3'
miRNA:   3'- aCGUCuuCUCugGCUuu-GAAG--CCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.