miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3627 3' -50.1 NC_001650.1 + 122675 0.66 0.99867
Target:  5'- aGGAGACccucCUGGGcUGCCUGAGgcGGUa -3'
miRNA:   3'- -CCUCUGu---GAUCUcAUGGACUUgaCCA- -5'
3627 3' -50.1 NC_001650.1 + 155414 0.66 0.998078
Target:  5'- cGGAcGgGCUGGAGUAcucCCUGGACgcccUGGg -3'
miRNA:   3'- -CCUcUgUGAUCUCAU---GGACUUG----ACCa -5'
3627 3' -50.1 NC_001650.1 + 155746 0.66 0.997278
Target:  5'- gGGAGACcguGCUGGuuuuCCUGAACaGGa -3'
miRNA:   3'- -CCUCUG---UGAUCucauGGACUUGaCCa -5'
3627 3' -50.1 NC_001650.1 + 106850 0.67 0.996219
Target:  5'- gGGuGGGCGCUGGGGUcggGCCcGGGgUGGa -3'
miRNA:   3'- -CC-UCUGUGAUCUCA---UGGaCUUgACCa -5'
3627 3' -50.1 NC_001650.1 + 43874 0.67 0.996219
Target:  5'- uGGGACAgcgcaUAGAGUGUCUGAGuuCUGGUa -3'
miRNA:   3'- cCUCUGUg----AUCUCAUGGACUU--GACCA- -5'
3627 3' -50.1 NC_001650.1 + 29699 0.67 0.995575
Target:  5'- uGGAgGACGC-GGAGUGCCUGggUc--- -3'
miRNA:   3'- -CCU-CUGUGaUCUCAUGGACuuGacca -5'
3627 3' -50.1 NC_001650.1 + 127855 0.67 0.995575
Target:  5'- uGGAGAUuuuuaUGGAG-ACC-GAGCUGGa -3'
miRNA:   3'- -CCUCUGug---AUCUCaUGGaCUUGACCa -5'
3627 3' -50.1 NC_001650.1 + 30998 0.67 0.995575
Target:  5'- cGGAuGCACaGGAGcaggGCCUG-GCUGGg -3'
miRNA:   3'- -CCUcUGUGaUCUCa---UGGACuUGACCa -5'
3627 3' -50.1 NC_001650.1 + 130798 0.67 0.994844
Target:  5'- gGGAGGCGCUGGAc-GCCccgGAcCUGGc -3'
miRNA:   3'- -CCUCUGUGAUCUcaUGGa--CUuGACCa -5'
3627 3' -50.1 NC_001650.1 + 59564 0.67 0.994844
Target:  5'- uGGGGGCGCcaGGAGUGCgaGccCUGGg -3'
miRNA:   3'- -CCUCUGUGa-UCUCAUGgaCuuGACCa -5'
3627 3' -50.1 NC_001650.1 + 146104 0.67 0.994018
Target:  5'- gGGGGAacuggcccCGCagGGAGUACUUGGcCUGGUc -3'
miRNA:   3'- -CCUCU--------GUGa-UCUCAUGGACUuGACCA- -5'
3627 3' -50.1 NC_001650.1 + 101994 0.68 0.993088
Target:  5'- uGAGAgGCgGGcuGGUACCUGGGCUcGGg -3'
miRNA:   3'- cCUCUgUGaUC--UCAUGGACUUGA-CCa -5'
3627 3' -50.1 NC_001650.1 + 178406 0.68 0.989593
Target:  5'- aGGGGGCGCccAGAGcACCcaccgaGAGCUGGa -3'
miRNA:   3'- -CCUCUGUGa-UCUCaUGGa-----CUUGACCa -5'
3627 3' -50.1 NC_001650.1 + 50067 0.68 0.989593
Target:  5'- aGGAGA-GCUAGGGUAgCUGAGgUGa- -3'
miRNA:   3'- -CCUCUgUGAUCUCAUgGACUUgACca -5'
3627 3' -50.1 NC_001650.1 + 135346 0.68 0.989593
Target:  5'- cGGGACGagaUGGAG-GCCUguGAGCUGGg -3'
miRNA:   3'- cCUCUGUg--AUCUCaUGGA--CUUGACCa -5'
3627 3' -50.1 NC_001650.1 + 11699 0.68 0.989593
Target:  5'- aGGGGGCGCccAGAGcACCcaccgaGAGCUGGa -3'
miRNA:   3'- -CCUCUGUGa-UCUCaUGGa-----CUUGACCa -5'
3627 3' -50.1 NC_001650.1 + 147679 0.69 0.986585
Target:  5'- gGGAGcCGCUcuggGGGGUACCUGcuCggGGUg -3'
miRNA:   3'- -CCUCuGUGA----UCUCAUGGACuuGa-CCA- -5'
3627 3' -50.1 NC_001650.1 + 100277 0.69 0.980874
Target:  5'- aGAGGCGCgccucgGGGGUcACUuugGAGCUGGUg -3'
miRNA:   3'- cCUCUGUGa-----UCUCA-UGGa--CUUGACCA- -5'
3627 3' -50.1 NC_001650.1 + 36032 0.69 0.978616
Target:  5'- gGGAGGCGCccaGGAGcgugcuCCUGAAcCUGGg -3'
miRNA:   3'- -CCUCUGUGa--UCUCau----GGACUU-GACCa -5'
3627 3' -50.1 NC_001650.1 + 39424 0.7 0.976166
Target:  5'- uGAGAUAUUAGGGaACCUGGaccGCUGuGUa -3'
miRNA:   3'- cCUCUGUGAUCUCaUGGACU---UGAC-CA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.