miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3628 3' -50.7 NC_001650.1 + 120852 0.66 0.994742
Target:  5'- aGCGCuggcuGGcgCUCuccuacgcgGCGGCGCUGGGg- -3'
miRNA:   3'- aCGUGu----UCuaGAG---------UGUCGUGACCUaa -5'
3628 3' -50.7 NC_001650.1 + 51505 0.66 0.994742
Target:  5'- cUGCACAAGAUCgccgagcuggCcCAGCcACUGGc-- -3'
miRNA:   3'- -ACGUGUUCUAGa---------GuGUCG-UGACCuaa -5'
3628 3' -50.7 NC_001650.1 + 107330 0.66 0.993884
Target:  5'- -aCACAAuGAUCUCuAUGGCAgUGGGUa -3'
miRNA:   3'- acGUGUU-CUAGAG-UGUCGUgACCUAa -5'
3628 3' -50.7 NC_001650.1 + 130460 0.66 0.993884
Target:  5'- cGCGCGAGAgucuggUCUgGCuGCACaGGAc- -3'
miRNA:   3'- aCGUGUUCU------AGAgUGuCGUGaCCUaa -5'
3628 3' -50.7 NC_001650.1 + 38211 0.66 0.992918
Target:  5'- ----uGAGAUCUCGCA-CGCUGGAc- -3'
miRNA:   3'- acgugUUCUAGAGUGUcGUGACCUaa -5'
3628 3' -50.7 NC_001650.1 + 118209 0.66 0.992918
Target:  5'- cGCACAcgcccugaaAGAugcUCUgGCAGCGCUcgGGGUUc -3'
miRNA:   3'- aCGUGU---------UCU---AGAgUGUCGUGA--CCUAA- -5'
3628 3' -50.7 NC_001650.1 + 31001 0.66 0.99062
Target:  5'- aUGCACAGGAg--CAgGGCcugGCUGGGg- -3'
miRNA:   3'- -ACGUGUUCUagaGUgUCG---UGACCUaa -5'
3628 3' -50.7 NC_001650.1 + 59358 0.66 0.99062
Target:  5'- aGCGCcgcAGGg--CGCAGCugUGGAUg -3'
miRNA:   3'- aCGUGu--UCUagaGUGUCGugACCUAa -5'
3628 3' -50.7 NC_001650.1 + 52018 0.66 0.99062
Target:  5'- uUGUAUggGAUCUUucgguuGCAUUGGAUa -3'
miRNA:   3'- -ACGUGuuCUAGAGugu---CGUGACCUAa -5'
3628 3' -50.7 NC_001650.1 + 128077 0.66 0.99062
Target:  5'- gGCGCGAGAUCUC-CAGCuc-GGu-- -3'
miRNA:   3'- aCGUGUUCUAGAGuGUCGugaCCuaa -5'
3628 3' -50.7 NC_001650.1 + 21613 0.67 0.987773
Target:  5'- gGCACAGGGugggcgccgUCUCugAGCugcccgcgggGCUGGGg- -3'
miRNA:   3'- aCGUGUUCU---------AGAGugUCG----------UGACCUaa -5'
3628 3' -50.7 NC_001650.1 + 73192 0.68 0.980126
Target:  5'- gGCGCAGGAg--CGCGcGUACUGGGc- -3'
miRNA:   3'- aCGUGUUCUagaGUGU-CGUGACCUaa -5'
3628 3' -50.7 NC_001650.1 + 102832 0.69 0.966147
Target:  5'- aGUccgGCGAGAcCUCGCAGgaACUGGAUa -3'
miRNA:   3'- aCG---UGUUCUaGAGUGUCg-UGACCUAa -5'
3628 3' -50.7 NC_001650.1 + 154286 0.69 0.950819
Target:  5'- gGCuuUggGGUCUCAUaggAGCACUGGGc- -3'
miRNA:   3'- aCGu-GuuCUAGAGUG---UCGUGACCUaa -5'
3628 3' -50.7 NC_001650.1 + 38408 0.71 0.901303
Target:  5'- cGUGCGAGAUCUCAgAGagggaagGCUGGAg- -3'
miRNA:   3'- aCGUGUUCUAGAGUgUCg------UGACCUaa -5'
3628 3' -50.7 NC_001650.1 + 86216 0.72 0.856773
Target:  5'- aGCACGGGuAUCUCGCAGgCGCUGu--- -3'
miRNA:   3'- aCGUGUUC-UAGAGUGUC-GUGACcuaa -5'
3628 3' -50.7 NC_001650.1 + 39954 1.06 0.012317
Target:  5'- cUGCACAAGAUCUCACAGCACUGGAUUg -3'
miRNA:   3'- -ACGUGUUCUAGAGUGUCGUGACCUAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.