miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3629 3' -49.6 NC_001650.1 + 11116 0.66 0.998713
Target:  5'- -gUGGugGAGGguGGUGGUGgucucUGAGGUu -3'
miRNA:   3'- ugACUugCUCC--CCACCACa----ACUUUAu -5'
3629 3' -49.6 NC_001650.1 + 180915 0.66 0.998713
Target:  5'- --cGGGCGGGcGGGcaGGUGggGAGAUGc -3'
miRNA:   3'- ugaCUUGCUC-CCCa-CCACaaCUUUAU- -5'
3629 3' -49.6 NC_001650.1 + 14208 0.66 0.998713
Target:  5'- --cGGGCGGGcGGGcaGGUGggGAGAUGc -3'
miRNA:   3'- ugaCUUGCUC-CCCa-CCACaaCUUUAU- -5'
3629 3' -49.6 NC_001650.1 + 29052 0.66 0.998713
Target:  5'- --gGcGCGGGGGGUGGccgacgUGggGGAGUAc -3'
miRNA:   3'- ugaCuUGCUCCCCACC------ACaaCUUUAU- -5'
3629 3' -49.6 NC_001650.1 + 22347 0.66 0.998713
Target:  5'- uGCUGGGCcugcaccuGGGGGUGGUGggcagcgGGGAg- -3'
miRNA:   3'- -UGACUUGc-------UCCCCACCACaa-----CUUUau -5'
3629 3' -49.6 NC_001650.1 + 177823 0.66 0.998713
Target:  5'- -gUGGugGAGGguGGUGGUGgucucUGAGGUu -3'
miRNA:   3'- ugACUugCUCC--CCACCACa----ACUUUAu -5'
3629 3' -49.6 NC_001650.1 + 44365 0.66 0.998443
Target:  5'- --gGggUGAGGGGgugagggGGUGagGggGUGa -3'
miRNA:   3'- ugaCuuGCUCCCCa------CCACaaCuuUAU- -5'
3629 3' -49.6 NC_001650.1 + 51453 0.66 0.998413
Target:  5'- cCUGAGCGuGGccgucacGGUGGUGggaGggGUGa -3'
miRNA:   3'- uGACUUGCuCC-------CCACCACaa-CuuUAU- -5'
3629 3' -49.6 NC_001650.1 + 132277 0.66 0.997757
Target:  5'- cCUGAcucccuuuccGCGucGGGGacGGUGUUGggGUAc -3'
miRNA:   3'- uGACU----------UGCu-CCCCa-CCACAACuuUAU- -5'
3629 3' -49.6 NC_001650.1 + 60527 0.66 0.997757
Target:  5'- cCUGGGCaGAGGcGGcggucuguuUGGUGUUGggGa- -3'
miRNA:   3'- uGACUUG-CUCC-CC---------ACCACAACuuUau -5'
3629 3' -49.6 NC_001650.1 + 18128 0.66 0.997757
Target:  5'- cCUcGGCGguGGGGGUGGUGUgGggGg- -3'
miRNA:   3'- uGAcUUGC--UCCCCACCACAaCuuUau -5'
3629 3' -49.6 NC_001650.1 + 639 0.66 0.997329
Target:  5'- uGCgUGGGCGGGGGGaguggcuggGGUGUUGu---- -3'
miRNA:   3'- -UG-ACUUGCUCCCCa--------CCACAACuuuau -5'
3629 3' -49.6 NC_001650.1 + 151341 0.66 0.997329
Target:  5'- --aGGAgGAGGaGGUGGUGgaGGAGg- -3'
miRNA:   3'- ugaCUUgCUCC-CCACCACaaCUUUau -5'
3629 3' -49.6 NC_001650.1 + 167346 0.66 0.997329
Target:  5'- uGCgUGGGCGGGGGGaguggcuggGGUGUUGu---- -3'
miRNA:   3'- -UG-ACUUGCUCCCCa--------CCACAACuuuau -5'
3629 3' -49.6 NC_001650.1 + 106121 0.67 0.996269
Target:  5'- cCUGGccacaaGGGGGGUGGUGgUGGAc-- -3'
miRNA:   3'- uGACUug----CUCCCCACCACaACUUuau -5'
3629 3' -49.6 NC_001650.1 + 157510 0.67 0.996269
Target:  5'- cCUGGGCGAGGGcGggGGcGggGAGGUGc -3'
miRNA:   3'- uGACUUGCUCCC-Ca-CCaCaaCUUUAU- -5'
3629 3' -49.6 NC_001650.1 + 20249 0.68 0.992056
Target:  5'- cUUGAugGGGGGG-GGUGUgcaUGcGAGUAu -3'
miRNA:   3'- uGACUugCUCCCCaCCACA---AC-UUUAU- -5'
3629 3' -49.6 NC_001650.1 + 118019 0.69 0.980663
Target:  5'- gGCgagGGGCGAGGGGgagGGUGccGggGc- -3'
miRNA:   3'- -UGa--CUUGCUCCCCa--CCACaaCuuUau -5'
3629 3' -49.6 NC_001650.1 + 99761 0.69 0.978351
Target:  5'- gGCUGGGgGAGGGGggagGGaUGggGAAGg- -3'
miRNA:   3'- -UGACUUgCUCCCCa---CC-ACaaCUUUau -5'
3629 3' -49.6 NC_001650.1 + 129114 0.7 0.975841
Target:  5'- --aGAACaGGGuGGUGGUGUUGAu--- -3'
miRNA:   3'- ugaCUUGcUCC-CCACCACAACUuuau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.