Results 1 - 8 of 8 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 363 | 5' | -61 | AC_000011.1 | + | 11761 | 0.66 | 0.362414 |
|
Target: 5'- aCCGUGcgguGAGCgCCagcaGGCGGCGcGAGc -3' miRNA: 3'- gGGCACau--CUUG-GGg---CCGCCGCcCUC- -5' |
|||||||
| 363 | 5' | -61 | AC_000011.1 | + | 23516 | 0.66 | 0.345894 |
|
Target: 5'- --gGUGgcGGGgCUgGGCGGCGGGGc -3' miRNA: 3'- gggCACauCUUgGGgCCGCCGCCCUc -5' |
|||||||
| 363 | 5' | -61 | AC_000011.1 | + | 18134 | 0.66 | 0.345082 |
|
Target: 5'- cCCCGgGUcgcgcgcGGGccacgGCCaCCGGCGGCaGGGGc -3' miRNA: 3'- -GGGCaCA-------UCU-----UGG-GGCCGCCGcCCUC- -5' |
|||||||
| 363 | 5' | -61 | AC_000011.1 | + | 20013 | 0.68 | 0.25829 |
|
Target: 5'- --gGUGUAGGACCCgGGCaggaGCaGGAGg -3' miRNA: 3'- gggCACAUCUUGGGgCCGc---CGcCCUC- -5' |
|||||||
| 363 | 5' | -61 | AC_000011.1 | + | 5863 | 0.7 | 0.18968 |
|
Target: 5'- gCCaCGUGaccgGGggUCCCGGcCGGgGGGGu -3' miRNA: 3'- -GG-GCACa---UCuuGGGGCC-GCCgCCCUc -5' |
|||||||
| 363 | 5' | -61 | AC_000011.1 | + | 15753 | 0.7 | 0.18475 |
|
Target: 5'- uCCaCG-GUGGAGacgggCgCGGCGGCGGGGGu -3' miRNA: 3'- -GG-GCaCAUCUUg----GgGCCGCCGCCCUC- -5' |
|||||||
| 363 | 5' | -61 | AC_000011.1 | + | 10154 | 0.72 | 0.137611 |
|
Target: 5'- gCUGgcgGUAGAGCggccaucgCUCGGUGGCGGGGGc -3' miRNA: 3'- gGGCa--CAUCUUG--------GGGCCGCCGCCCUC- -5' |
|||||||
| 363 | 5' | -61 | AC_000011.1 | + | 13247 | 1.09 | 0.000211 |
|
Target: 5'- gCCCGUGUAGAACCCCGGCGGCGGGAGc -3' miRNA: 3'- -GGGCACAUCUUGGGGCCGCCGCCCUC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home