Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3630 | 3' | -44.8 | NC_001650.1 | + | 159442 | 0.68 | 0.999968 |
Target: 5'- --gGCGUUGUUGUAGUGGuggacucUGUg -3' miRNA: 3'- cuaCGCGACGACAUCACUuuaaa--ACG- -5' |
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3630 | 3' | -44.8 | NC_001650.1 | + | 147040 | 0.68 | 0.999922 |
Target: 5'- gGcgGCGUUGgUGUGGUGGGcguUUUUGg -3' miRNA: 3'- -CuaCGCGACgACAUCACUUu--AAAACg -5' |
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3630 | 3' | -44.8 | NC_001650.1 | + | 80788 | 0.69 | 0.999897 |
Target: 5'- uGGUGUGCUcGCUGaUGGUGggGca--GCa -3' miRNA: 3'- -CUACGCGA-CGAC-AUCACuuUaaaaCG- -5' |
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3630 | 3' | -44.8 | NC_001650.1 | + | 139148 | 0.69 | 0.999824 |
Target: 5'- aGUGCuGUauUGCUGUAGUGc--UUUUGCc -3' miRNA: 3'- cUACG-CG--ACGACAUCACuuuAAAACG- -5' |
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3630 | 3' | -44.8 | NC_001650.1 | + | 159363 | 0.7 | 0.999627 |
Target: 5'- uGGUGCcauuggaaGUUGCUGUGGUGcuGGUggUGCu -3' miRNA: 3'- -CUACG--------CGACGACAUCACu-UUAaaACG- -5' |
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3630 | 3' | -44.8 | NC_001650.1 | + | 51284 | 0.7 | 0.999228 |
Target: 5'- uGAUGgGCUGCUGcgAGUGGcccaaggGCg -3' miRNA: 3'- -CUACgCGACGACa-UCACUuuaaaa-CG- -5' |
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3630 | 3' | -44.8 | NC_001650.1 | + | 65696 | 0.72 | 0.997557 |
Target: 5'- --gGCGCagGCUGUAGUGAuuc-UUGUc -3' miRNA: 3'- cuaCGCGa-CGACAUCACUuuaaAACG- -5' |
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3630 | 3' | -44.8 | NC_001650.1 | + | 57228 | 0.75 | 0.980543 |
Target: 5'- -cUGuUGCUGCUGUGGcUGggGUUgggGCg -3' miRNA: 3'- cuAC-GCGACGACAUC-ACuuUAAaa-CG- -5' |
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3630 | 3' | -44.8 | NC_001650.1 | + | 40476 | 0.81 | 0.833957 |
Target: 5'- --cGUGCUGUucUGUAGUGAAAUUaUGCu -3' miRNA: 3'- cuaCGCGACG--ACAUCACUUUAAaACG- -5' |
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3630 | 3' | -44.8 | NC_001650.1 | + | 40723 | 1.03 | 0.083715 |
Target: 5'- cGAUGCGC-GCUGUAGUGAAAUUUUGCa -3' miRNA: 3'- -CUACGCGaCGACAUCACUUUAAAACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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