miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3630 5' -43.7 NC_001650.1 + 65909 0.66 1
Target:  5'- gCAGCAggucagAGUgccccCugUGCGGGGCGGCc -3'
miRNA:   3'- -GUCGUa-----UUAaa---GugAUGUCUUGUCGu -5'
3630 5' -43.7 NC_001650.1 + 80794 0.67 1
Target:  5'- uCAGgGUGGUgugcUCGCUGaugguGGGGCAGCAc -3'
miRNA:   3'- -GUCgUAUUAa---AGUGAUg----UCUUGUCGU- -5'
3630 5' -43.7 NC_001650.1 + 133642 0.66 1
Target:  5'- aCGGCcccGUUUCACaACAGAGCcaGGCc -3'
miRNA:   3'- -GUCGuauUAAAGUGaUGUCUUG--UCGu -5'
3630 5' -43.7 NC_001650.1 + 107254 0.66 1
Target:  5'- aUAGCGU---UagACUGCAGGGcCAGCAu -3'
miRNA:   3'- -GUCGUAuuaAagUGAUGUCUU-GUCGU- -5'
3630 5' -43.7 NC_001650.1 + 76298 0.67 0.999999
Target:  5'- uCAGCAgGAUgagCACcagcaUGgAGAACAGCAu -3'
miRNA:   3'- -GUCGUaUUAaa-GUG-----AUgUCUUGUCGU- -5'
3630 5' -43.7 NC_001650.1 + 31330 0.67 0.999999
Target:  5'- gAGCAg----UCcuuCUGCAGGGCGGCu -3'
miRNA:   3'- gUCGUauuaaAGu--GAUGUCUUGUCGu -5'
3630 5' -43.7 NC_001650.1 + 116731 0.67 0.999999
Target:  5'- gCGGguUAAUacacUCACUgGCAGGACAGaCAg -3'
miRNA:   3'- -GUCguAUUAa---AGUGA-UGUCUUGUC-GU- -5'
3630 5' -43.7 NC_001650.1 + 13839 0.67 0.999998
Target:  5'- gAGCugccgggUUCugUuguCAGAGCAGCAu -3'
miRNA:   3'- gUCGuauua--AAGugAu--GUCUUGUCGU- -5'
3630 5' -43.7 NC_001650.1 + 122171 0.67 0.999998
Target:  5'- gCAGCAUGGccUCcaGCUcGgGGAGCAGCAc -3'
miRNA:   3'- -GUCGUAUUaaAG--UGA-UgUCUUGUCGU- -5'
3630 5' -43.7 NC_001650.1 + 68369 0.67 0.999998
Target:  5'- gGGCAUGAag-CACUugAGGuugcccACGGCGu -3'
miRNA:   3'- gUCGUAUUaaaGUGAugUCU------UGUCGU- -5'
3630 5' -43.7 NC_001650.1 + 86905 0.67 0.999998
Target:  5'- aCAGCucgGUGAgcagCACc-CAGAACAGCAc -3'
miRNA:   3'- -GUCG---UAUUaaa-GUGauGUCUUGUCGU- -5'
3630 5' -43.7 NC_001650.1 + 180546 0.67 0.999998
Target:  5'- gAGCugccgggUUCugUuguCAGAGCAGCAu -3'
miRNA:   3'- gUCGuauua--AAGugAu--GUCUUGUCGU- -5'
3630 5' -43.7 NC_001650.1 + 164379 0.68 0.999995
Target:  5'- gAGUGUGGUccgCGCUGCAGAACucGCc -3'
miRNA:   3'- gUCGUAUUAaa-GUGAUGUCUUGu-CGu -5'
3630 5' -43.7 NC_001650.1 + 69284 0.68 0.999995
Target:  5'- cCAGCAgcgcgaagUAGUUUCGCgUGCAGGucGCGcGCAg -3'
miRNA:   3'- -GUCGU--------AUUAAAGUG-AUGUCU--UGU-CGU- -5'
3630 5' -43.7 NC_001650.1 + 55314 0.68 0.999993
Target:  5'- aAGUAauAUUUUugUACAGGAUGGCu -3'
miRNA:   3'- gUCGUauUAAAGugAUGUCUUGUCGu -5'
3630 5' -43.7 NC_001650.1 + 57837 0.68 0.999993
Target:  5'- gAGCAUAGccgCcCUGCAGAGCgAGCu -3'
miRNA:   3'- gUCGUAUUaaaGuGAUGUCUUG-UCGu -5'
3630 5' -43.7 NC_001650.1 + 34184 0.69 0.999985
Target:  5'- aCAGCAUAGa-UCAUgGCAgGGACAGCu -3'
miRNA:   3'- -GUCGUAUUaaAGUGaUGU-CUUGUCGu -5'
3630 5' -43.7 NC_001650.1 + 103663 0.69 0.999985
Target:  5'- -uGCGUGAUgcuggCACUguggACGGAGCAGUu -3'
miRNA:   3'- guCGUAUUAaa---GUGA----UGUCUUGUCGu -5'
3630 5' -43.7 NC_001650.1 + 42664 0.69 0.999984
Target:  5'- gUAGCAUAGccccggguagagUUCGCUGCAGAGcCAGgGu -3'
miRNA:   3'- -GUCGUAUUa-----------AAGUGAUGUCUU-GUCgU- -5'
3630 5' -43.7 NC_001650.1 + 42877 0.69 0.999961
Target:  5'- aCGGCGU--UUUCACUgucaGCGGGAUAGUc -3'
miRNA:   3'- -GUCGUAuuAAAGUGA----UGUCUUGUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.