miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3631 3' -50.5 NC_001650.1 + 171686 0.66 0.997649
Target:  5'- ---cCGGCCuGGAUUugcAGAGGCCUAccGGc -3'
miRNA:   3'- cuacGCUGGuCCUAA---UCUUCGGAU--CC- -5'
3631 3' -50.5 NC_001650.1 + 4979 0.66 0.997649
Target:  5'- ---cCGGCCuGGAUUugcAGAGGCCUAccGGc -3'
miRNA:   3'- cuacGCUGGuCCUAA---UCUUCGGAU--CC- -5'
3631 3' -50.5 NC_001650.1 + 75009 0.66 0.997649
Target:  5'- uGAUGaUGGCCAGG--UAGAuGGCC-AGGu -3'
miRNA:   3'- -CUAC-GCUGGUCCuaAUCU-UCGGaUCC- -5'
3631 3' -50.5 NC_001650.1 + 73493 0.66 0.997649
Target:  5'- cGUGCGcgggcACCAGGAU-GGAgcuguAGCCcAGGc -3'
miRNA:   3'- cUACGC-----UGGUCCUAaUCU-----UCGGaUCC- -5'
3631 3' -50.5 NC_001650.1 + 46930 0.66 0.997649
Target:  5'- --cGCGAUCGcGGUggcAGuAGCCUGGGg -3'
miRNA:   3'- cuaCGCUGGUcCUAa--UCuUCGGAUCC- -5'
3631 3' -50.5 NC_001650.1 + 48854 0.66 0.997211
Target:  5'- aGGUGCGcgaAgCAGGAggcGGAGCCgguugAGGa -3'
miRNA:   3'- -CUACGC---UgGUCCUaauCUUCGGa----UCC- -5'
3631 3' -50.5 NC_001650.1 + 59565 0.66 0.997211
Target:  5'- gGggGCG-CCAGGAgUGcGAGcCCUGGGu -3'
miRNA:   3'- -CuaCGCuGGUCCUaAUcUUC-GGAUCC- -5'
3631 3' -50.5 NC_001650.1 + 165122 0.66 0.997211
Target:  5'- gGcgGCGGCCGcGGu---GggGCCcGGGg -3'
miRNA:   3'- -CuaCGCUGGU-CCuaauCuuCGGaUCC- -5'
3631 3' -50.5 NC_001650.1 + 54790 0.66 0.996707
Target:  5'- --cGCGACCAcccacccucGGAUUuu-GGCCUAGc -3'
miRNA:   3'- cuaCGCUGGU---------CCUAAucuUCGGAUCc -5'
3631 3' -50.5 NC_001650.1 + 9149 0.66 0.996707
Target:  5'- -cUGCGggguGCCGGGGUUAGGccCCaUGGGa -3'
miRNA:   3'- cuACGC----UGGUCCUAAUCUucGG-AUCC- -5'
3631 3' -50.5 NC_001650.1 + 175856 0.66 0.996707
Target:  5'- -cUGCGggguGCCGGGGUUAGGccCCaUGGGa -3'
miRNA:   3'- cuACGC----UGGUCCUAAUCUucGG-AUCC- -5'
3631 3' -50.5 NC_001650.1 + 6992 0.66 0.996707
Target:  5'- --aGUGGCCcaauggGGGAUaagGGggGaCCUGGGu -3'
miRNA:   3'- cuaCGCUGG------UCCUAa--UCuuC-GGAUCC- -5'
3631 3' -50.5 NC_001650.1 + 173699 0.66 0.996707
Target:  5'- --aGUGGCCcaauggGGGAUaagGGggGaCCUGGGu -3'
miRNA:   3'- cuaCGCUGG------UCCUAa--UCuuC-GGAUCC- -5'
3631 3' -50.5 NC_001650.1 + 110687 0.66 0.996707
Target:  5'- cGAUGCcgGACCGGGAcccagcgGGcAGGCC-AGGc -3'
miRNA:   3'- -CUACG--CUGGUCCUaa-----UC-UUCGGaUCC- -5'
3631 3' -50.5 NC_001650.1 + 35830 0.66 0.996542
Target:  5'- --cGCGGCCAGGGacuccuggacggagUUGGAGuacgacugcGCCgcgGGGg -3'
miRNA:   3'- cuaCGCUGGUCCU--------------AAUCUU---------CGGa--UCC- -5'
3631 3' -50.5 NC_001650.1 + 130005 0.66 0.99613
Target:  5'- --gGCGGCgCGGGAc--GAGGCCgcGGg -3'
miRNA:   3'- cuaCGCUG-GUCCUaauCUUCGGauCC- -5'
3631 3' -50.5 NC_001650.1 + 135143 0.66 0.99613
Target:  5'- uGAUGaccaGGCCAGGAUcagacUGGggGUg-AGGa -3'
miRNA:   3'- -CUACg---CUGGUCCUA-----AUCuuCGgaUCC- -5'
3631 3' -50.5 NC_001650.1 + 22885 0.66 0.995473
Target:  5'- --gGCcGCCAGGA-UGGAGGCCa--- -3'
miRNA:   3'- cuaCGcUGGUCCUaAUCUUCGGaucc -5'
3631 3' -50.5 NC_001650.1 + 61697 0.67 0.994728
Target:  5'- --gGCGGCCAGGAaaAGAuGGCCg--- -3'
miRNA:   3'- cuaCGCUGGUCCUaaUCU-UCGGaucc -5'
3631 3' -50.5 NC_001650.1 + 50935 0.67 0.994648
Target:  5'- --cGCGGCCcuguccuucuGGAUcuuuaggUAGAGGCCgUGGGg -3'
miRNA:   3'- cuaCGCUGGu---------CCUA-------AUCUUCGG-AUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.