miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3632 3' -48.1 NC_001650.1 + 163226 0.66 0.999713
Target:  5'- -aGUGGUUG-GCGGUGGAUggGGUGGa -3'
miRNA:   3'- uaCAUCGAUgCGUCACUUGa-UCAUCg -5'
3632 3' -48.1 NC_001650.1 + 99285 0.66 0.999637
Target:  5'- aGUGUGGCUGCGUGGacuGCcAGaGGCu -3'
miRNA:   3'- -UACAUCGAUGCGUCacuUGaUCaUCG- -5'
3632 3' -48.1 NC_001650.1 + 143592 0.66 0.999637
Target:  5'- ---gGGCUGgGUAGggaggGAGCUAGgAGCu -3'
miRNA:   3'- uacaUCGAUgCGUCa----CUUGAUCaUCG- -5'
3632 3' -48.1 NC_001650.1 + 47432 0.66 0.999628
Target:  5'- -gGUAGCUGCGagGGUcucucucaaaagaGAACUAGU-GCc -3'
miRNA:   3'- uaCAUCGAUGCg-UCA-------------CUUGAUCAuCG- -5'
3632 3' -48.1 NC_001650.1 + 11642 0.66 0.999428
Target:  5'- uUGUAGUUG---GGUGGGCUgGGUGGCg -3'
miRNA:   3'- uACAUCGAUgcgUCACUUGA-UCAUCG- -5'
3632 3' -48.1 NC_001650.1 + 178349 0.66 0.999428
Target:  5'- uUGUAGUUG---GGUGGGCUgGGUGGCg -3'
miRNA:   3'- uACAUCGAUgcgUCACUUGA-UCAUCG- -5'
3632 3' -48.1 NC_001650.1 + 157401 0.66 0.999289
Target:  5'- ---cGGCcuucUGCAG-GAACUGGUAGCc -3'
miRNA:   3'- uacaUCGau--GCGUCaCUUGAUCAUCG- -5'
3632 3' -48.1 NC_001650.1 + 155783 0.67 0.999122
Target:  5'- ---gGGCUgGUGCAG-GGGCUGGUGGCc -3'
miRNA:   3'- uacaUCGA-UGCGUCaCUUGAUCAUCG- -5'
3632 3' -48.1 NC_001650.1 + 29193 0.67 0.998922
Target:  5'- uUGggGGUcAgGCAGUGGAUggUGGUGGCg -3'
miRNA:   3'- uACa-UCGaUgCGUCACUUG--AUCAUCG- -5'
3632 3' -48.1 NC_001650.1 + 42951 0.67 0.998405
Target:  5'- -cGUAGCUaGCGCGcGUGG--UAGUGGUc -3'
miRNA:   3'- uaCAUCGA-UGCGU-CACUugAUCAUCG- -5'
3632 3' -48.1 NC_001650.1 + 175876 0.68 0.997692
Target:  5'- uGUGUGGCUGCcggcCGGaGAGCUGuGUGGUu -3'
miRNA:   3'- -UACAUCGAUGc---GUCaCUUGAU-CAUCG- -5'
3632 3' -48.1 NC_001650.1 + 9169 0.68 0.997692
Target:  5'- uGUGUGGCUGCcggcCGGaGAGCUGuGUGGUu -3'
miRNA:   3'- -UACAUCGAUGc---GUCaCUUGAU-CAUCG- -5'
3632 3' -48.1 NC_001650.1 + 76731 0.69 0.995461
Target:  5'- ---gGGCUGCGCucGUGcAGCagGGUGGCg -3'
miRNA:   3'- uacaUCGAUGCGu-CAC-UUGa-UCAUCG- -5'
3632 3' -48.1 NC_001650.1 + 139075 0.69 0.994689
Target:  5'- cUGUGGCUugGC---GAGCUGG-GGCa -3'
miRNA:   3'- uACAUCGAugCGucaCUUGAUCaUCG- -5'
3632 3' -48.1 NC_001650.1 + 132327 0.7 0.990481
Target:  5'- -aGUAGCUGC-CGGUGGGCggcccguaggGGUAGg -3'
miRNA:   3'- uaCAUCGAUGcGUCACUUGa---------UCAUCg -5'
3632 3' -48.1 NC_001650.1 + 156201 0.7 0.985875
Target:  5'- -gGUGGUcACGCAGggGGGCUcGGUGGUg -3'
miRNA:   3'- uaCAUCGaUGCGUCa-CUUGA-UCAUCG- -5'
3632 3' -48.1 NC_001650.1 + 48487 0.7 0.984011
Target:  5'- ---cAGCUugGCccuGUGGGCUAGggGGCu -3'
miRNA:   3'- uacaUCGAugCGu--CACUUGAUCa-UCG- -5'
3632 3' -48.1 NC_001650.1 + 41390 1.1 0.01458
Target:  5'- cAUGUAGCUACGCAGUGAACUAGUAGCc -3'
miRNA:   3'- -UACAUCGAUGCGUCACUUGAUCAUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.