miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3632 5' -57.6 NC_001650.1 + 53201 0.66 0.875563
Target:  5'- gGCGCG---AGGCagCGCgccucGACGCGGCACc -3'
miRNA:   3'- -UGCGCagaUCCG--GUGa----CUGCGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 103932 0.66 0.868332
Target:  5'- cCGUGUagAGGCCuauauaGGCGCAGUACg -3'
miRNA:   3'- uGCGCAgaUCCGGuga---CUGCGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 59435 0.66 0.868332
Target:  5'- gGCGCaGUU--GGCCAgggucuccCUGAacaGCAGCACg -3'
miRNA:   3'- -UGCG-CAGauCCGGU--------GACUg--CGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 100124 0.66 0.860894
Target:  5'- cCGCGauaUCguacuuGGCCACUGugGUguAGCAg -3'
miRNA:   3'- uGCGC---AGau----CCGGUGACugCG--UCGUg -5'
3632 5' -57.6 NC_001650.1 + 75313 0.66 0.853254
Target:  5'- aGCGCccccCUGcGGCCGCgGACGaGGCGCg -3'
miRNA:   3'- -UGCGca--GAU-CCGGUGaCUGCgUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 156413 0.66 0.845419
Target:  5'- uGCGCGgagauGGCC-CUGGCcggGCAGUGCg -3'
miRNA:   3'- -UGCGCagau-CCGGuGACUG---CGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 107420 0.67 0.837395
Target:  5'- -gGCGgCUGgacuuuccaaauGGCCACaGGcCGCAGCACg -3'
miRNA:   3'- ugCGCaGAU------------CCGGUGaCU-GCGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 110706 0.67 0.837395
Target:  5'- -aGCGggcAGGCCagGCUGcCGCAGCAg -3'
miRNA:   3'- ugCGCagaUCCGG--UGACuGCGUCGUg -5'
3632 5' -57.6 NC_001650.1 + 89475 0.67 0.837395
Target:  5'- cUGCG-CUGGGCCGCcGAgGCGGgguuCGCg -3'
miRNA:   3'- uGCGCaGAUCCGGUGaCUgCGUC----GUG- -5'
3632 5' -57.6 NC_001650.1 + 22252 0.67 0.837395
Target:  5'- aGCGCGUCcgccuuggggUGGGCCAgggccggGACG-GGCACg -3'
miRNA:   3'- -UGCGCAG----------AUCCGGUga-----CUGCgUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 81374 0.67 0.837395
Target:  5'- aGCGUGUU--GGCCGCg--UGCGGCGCu -3'
miRNA:   3'- -UGCGCAGauCCGGUGacuGCGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 60125 0.67 0.830018
Target:  5'- cCGCGg--AGGCCGCguccgcggucuccagGGCcaGCAGCACg -3'
miRNA:   3'- uGCGCagaUCCGGUGa--------------CUG--CGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 133883 0.67 0.829189
Target:  5'- uCGCcUCUagAGGCCGCcccuggGAcCGCGGCGCc -3'
miRNA:   3'- uGCGcAGA--UCCGGUGa-----CU-GCGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 60784 0.67 0.812261
Target:  5'- gGCGCGg--GGGUC-CUGAgGCAGUAg -3'
miRNA:   3'- -UGCGCagaUCCGGuGACUgCGUCGUg -5'
3632 5' -57.6 NC_001650.1 + 44242 0.67 0.812261
Target:  5'- aACGCaaaggGUCUcuGGCCucaaGAUGCAGCACg -3'
miRNA:   3'- -UGCG-----CAGAu-CCGGuga-CUGCGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 58669 0.67 0.794694
Target:  5'- cCGCc-CUGGuccucGCCACgcugGACGCGGCGCa -3'
miRNA:   3'- uGCGcaGAUC-----CGGUGa---CUGCGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 90173 0.68 0.785692
Target:  5'- cUGCGUCUcGGCggCGCUGGCGCccccuGGCGg -3'
miRNA:   3'- uGCGCAGAuCCG--GUGACUGCG-----UCGUg -5'
3632 5' -57.6 NC_001650.1 + 124087 0.68 0.776555
Target:  5'- gACGUGUCagAGGCCgACgggGGCGgAGCGu -3'
miRNA:   3'- -UGCGCAGa-UCCGG-UGa--CUGCgUCGUg -5'
3632 5' -57.6 NC_001650.1 + 77039 0.68 0.773789
Target:  5'- cCGCG-CUGGGCCucgGgggagcccguguccACGCGGCACa -3'
miRNA:   3'- uGCGCaGAUCCGGugaC--------------UGCGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 47542 0.68 0.757912
Target:  5'- cUGgGUCUauguGGcGCCGCcugGugGCGGCACg -3'
miRNA:   3'- uGCgCAGA----UC-CGGUGa--CugCGUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.