miRNA display CGI


Results 21 - 40 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3632 5' -57.6 NC_001650.1 + 23984 0.68 0.757912
Target:  5'- -gGCGUacCUGGGCaaGCUGGCGC-GCGCc -3'
miRNA:   3'- ugCGCA--GAUCCGg-UGACUGCGuCGUG- -5'
3632 5' -57.6 NC_001650.1 + 50841 0.68 0.757912
Target:  5'- cGCGCGagggCggcgAGcuGCCcuuucuGCUGGCGCAGCGCa -3'
miRNA:   3'- -UGCGCa---Ga---UC--CGG------UGACUGCGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 60282 0.69 0.729156
Target:  5'- cUGCGgCUgAGGCCGCUGG-GCGGCGg -3'
miRNA:   3'- uGCGCaGA-UCCGGUGACUgCGUCGUg -5'
3632 5' -57.6 NC_001650.1 + 46588 0.69 0.729156
Target:  5'- gGCGCaUCUGGuGCCccgcgGCcGAUGCGGCGCc -3'
miRNA:   3'- -UGCGcAGAUC-CGG-----UGaCUGCGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 69479 0.69 0.709562
Target:  5'- uCGCGcugCUGGGCCAcCUGAagaGCccAGCGCc -3'
miRNA:   3'- uGCGCa--GAUCCGGU-GACUg--CG--UCGUG- -5'
3632 5' -57.6 NC_001650.1 + 5722 0.69 0.699664
Target:  5'- gAUGUGggCUGGGCCGCUccucccacaaGAUGgCAGCGCc -3'
miRNA:   3'- -UGCGCa-GAUCCGGUGA----------CUGC-GUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 172429 0.69 0.699664
Target:  5'- gAUGUGggCUGGGCCGCUccucccacaaGAUGgCAGCGCc -3'
miRNA:   3'- -UGCGCa-GAUCCGGUGA----------CUGC-GUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 15163 0.69 0.679711
Target:  5'- -gGCGcCgc-GCCACgGGCGCGGCGCg -3'
miRNA:   3'- ugCGCaGaucCGGUGaCUGCGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 181870 0.69 0.679711
Target:  5'- -gGCGcCgc-GCCACgGGCGCGGCGCg -3'
miRNA:   3'- ugCGCaGaucCGGUGaCUGCGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 148054 0.69 0.679711
Target:  5'- gGCGCGUCUAGcGCCAacgUGACuuccaguaAGCACc -3'
miRNA:   3'- -UGCGCAGAUC-CGGUg--ACUGcg------UCGUG- -5'
3632 5' -57.6 NC_001650.1 + 51506 0.7 0.669673
Target:  5'- cCGCGUgcccgcccUUGGGCCACU--CGCAGCAg -3'
miRNA:   3'- uGCGCA--------GAUCCGGUGAcuGCGUCGUg -5'
3632 5' -57.6 NC_001650.1 + 111907 0.7 0.626273
Target:  5'- uACGCGUCcauGGCCAagcagauggcuuauCUGGugUGCGGCGCg -3'
miRNA:   3'- -UGCGCAGau-CCGGU--------------GACU--GCGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 125151 0.71 0.619199
Target:  5'- uGCGCGUCUAGaGUCACcGcC-CGGCACa -3'
miRNA:   3'- -UGCGCAGAUC-CGGUGaCuGcGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 100381 0.71 0.599023
Target:  5'- uCGCGgagCUGGGUCAUgugGugGCuGCACc -3'
miRNA:   3'- uGCGCa--GAUCCGGUGa--CugCGuCGUG- -5'
3632 5' -57.6 NC_001650.1 + 69073 0.71 0.578941
Target:  5'- cAUGUGUCUGgcGGCCAUgggcccggGcGCGCGGCACg -3'
miRNA:   3'- -UGCGCAGAU--CCGGUGa-------C-UGCGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 136381 0.72 0.549113
Target:  5'- uGCGgGUCggggucgAGGCCGCggggGGCGCcuucaGGCGCa -3'
miRNA:   3'- -UGCgCAGa------UCCGGUGa---CUGCG-----UCGUG- -5'
3632 5' -57.6 NC_001650.1 + 123804 0.72 0.549113
Target:  5'- gGCGCua-UGGaGCCcccCUGGCGCAGCACa -3'
miRNA:   3'- -UGCGcagAUC-CGGu--GACUGCGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 129981 0.72 0.519779
Target:  5'- gGCGCGggccCUgAGGCUGCUGAgGgCGGCGCg -3'
miRNA:   3'- -UGCGCa---GA-UCCGGUGACUgC-GUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 41152 0.73 0.472363
Target:  5'- aACGCcUCUAGGCUACUaACaCAGCACu -3'
miRNA:   3'- -UGCGcAGAUCCGGUGAcUGcGUCGUG- -5'
3632 5' -57.6 NC_001650.1 + 131960 0.73 0.46314
Target:  5'- cACGUGgucCUGGGCCAgCUGugG-AGCACg -3'
miRNA:   3'- -UGCGCa--GAUCCGGU-GACugCgUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.