Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3632 | 5' | -57.6 | NC_001650.1 | + | 89475 | 0.67 | 0.837395 |
Target: 5'- cUGCG-CUGGGCCGCcGAgGCGGgguuCGCg -3' miRNA: 3'- uGCGCaGAUCCGGUGaCUgCGUC----GUG- -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 124087 | 0.68 | 0.776555 |
Target: 5'- gACGUGUCagAGGCCgACgggGGCGgAGCGu -3' miRNA: 3'- -UGCGCAGa-UCCGG-UGa--CUGCgUCGUg -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 90173 | 0.68 | 0.785692 |
Target: 5'- cUGCGUCUcGGCggCGCUGGCGCccccuGGCGg -3' miRNA: 3'- uGCGCAGAuCCG--GUGACUGCG-----UCGUg -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 58669 | 0.67 | 0.794694 |
Target: 5'- cCGCc-CUGGuccucGCCACgcugGACGCGGCGCa -3' miRNA: 3'- uGCGcaGAUC-----CGGUGa---CUGCGUCGUG- -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 44242 | 0.67 | 0.812261 |
Target: 5'- aACGCaaaggGUCUcuGGCCucaaGAUGCAGCACg -3' miRNA: 3'- -UGCG-----CAGAu-CCGGuga-CUGCGUCGUG- -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 60784 | 0.67 | 0.812261 |
Target: 5'- gGCGCGg--GGGUC-CUGAgGCAGUAg -3' miRNA: 3'- -UGCGCagaUCCGGuGACUgCGUCGUg -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 133883 | 0.67 | 0.829189 |
Target: 5'- uCGCcUCUagAGGCCGCcccuggGAcCGCGGCGCc -3' miRNA: 3'- uGCGcAGA--UCCGGUGa-----CU-GCGUCGUG- -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 60125 | 0.67 | 0.830018 |
Target: 5'- cCGCGg--AGGCCGCguccgcggucuccagGGCcaGCAGCACg -3' miRNA: 3'- uGCGCagaUCCGGUGa--------------CUG--CGUCGUG- -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 110706 | 0.67 | 0.837395 |
Target: 5'- -aGCGggcAGGCCagGCUGcCGCAGCAg -3' miRNA: 3'- ugCGCagaUCCGG--UGACuGCGUCGUg -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 77039 | 0.68 | 0.773789 |
Target: 5'- cCGCG-CUGGGCCucgGgggagcccguguccACGCGGCACa -3' miRNA: 3'- uGCGCaGAUCCGGugaC--------------UGCGUCGUG- -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 50841 | 0.68 | 0.757912 |
Target: 5'- cGCGCGagggCggcgAGcuGCCcuuucuGCUGGCGCAGCGCa -3' miRNA: 3'- -UGCGCa---Ga---UC--CGG------UGACUGCGUCGUG- -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 47542 | 0.68 | 0.757912 |
Target: 5'- cUGgGUCUauguGGcGCCGCcugGugGCGGCACg -3' miRNA: 3'- uGCgCAGA----UC-CGGUGa--CugCGUCGUG- -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 129981 | 0.72 | 0.519779 |
Target: 5'- gGCGCGggccCUgAGGCUGCUGAgGgCGGCGCg -3' miRNA: 3'- -UGCGCa---GA-UCCGGUGACUgC-GUCGUG- -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 100381 | 0.71 | 0.599023 |
Target: 5'- uCGCGgagCUGGGUCAUgugGugGCuGCACc -3' miRNA: 3'- uGCGCa--GAUCCGGUGa--CugCGuCGUG- -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 111907 | 0.7 | 0.626273 |
Target: 5'- uACGCGUCcauGGCCAagcagauggcuuauCUGGugUGCGGCGCg -3' miRNA: 3'- -UGCGCAGau-CCGGU--------------GACU--GCGUCGUG- -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 15163 | 0.69 | 0.679711 |
Target: 5'- -gGCGcCgc-GCCACgGGCGCGGCGCg -3' miRNA: 3'- ugCGCaGaucCGGUGaCUGCGUCGUG- -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 181870 | 0.69 | 0.679711 |
Target: 5'- -gGCGcCgc-GCCACgGGCGCGGCGCg -3' miRNA: 3'- ugCGCaGaucCGGUGaCUGCGUCGUG- -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 148054 | 0.69 | 0.679711 |
Target: 5'- gGCGCGUCUAGcGCCAacgUGACuuccaguaAGCACc -3' miRNA: 3'- -UGCGCAGAUC-CGGUg--ACUGcg------UCGUG- -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 60282 | 0.69 | 0.729156 |
Target: 5'- cUGCGgCUgAGGCCGCUGG-GCGGCGg -3' miRNA: 3'- uGCGCaGA-UCCGGUGACUgCGUCGUg -5' |
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3632 | 5' | -57.6 | NC_001650.1 | + | 23984 | 0.68 | 0.757912 |
Target: 5'- -gGCGUacCUGGGCaaGCUGGCGC-GCGCc -3' miRNA: 3'- ugCGCA--GAUCCGg-UGACUGCGuCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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