miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3633 3' -55.3 NC_001650.1 + 118021 0.66 0.943074
Target:  5'- aGGGCgaGggGCGAGggggagGGUGCCGGgGCa- -3'
miRNA:   3'- -CCCGg-Ca-CGUUUa-----UCACGGCCaCGaa -5'
3633 3' -55.3 NC_001650.1 + 157390 0.66 0.943074
Target:  5'- gGGGUggaUGUGCAGcgGGgcaugacGCUGGUGCa- -3'
miRNA:   3'- -CCCG---GCACGUUuaUCa------CGGCCACGaa -5'
3633 3' -55.3 NC_001650.1 + 80948 0.66 0.938384
Target:  5'- aGGGCCGcGCAGGaaagGGUGCacaggcaGGUGgUg -3'
miRNA:   3'- -CCCGGCaCGUUUa---UCACGg------CCACgAa -5'
3633 3' -55.3 NC_001650.1 + 66915 0.66 0.928279
Target:  5'- gGGGCCGgggaGCA--UGGgGCCGGgGCg- -3'
miRNA:   3'- -CCCGGCa---CGUuuAUCaCGGCCaCGaa -5'
3633 3' -55.3 NC_001650.1 + 36891 0.66 0.92668
Target:  5'- cGGGCCGgGCGacuacgagaccuuuGAgcucgcgAGggGCCGGUGCa- -3'
miRNA:   3'- -CCCGGCaCGU--------------UUa------UCa-CGGCCACGaa -5'
3633 3' -55.3 NC_001650.1 + 15546 0.66 0.917206
Target:  5'- uGGGCUGuUGCucuGUGG-GCCGGUuGUUg -3'
miRNA:   3'- -CCCGGC-ACGuu-UAUCaCGGCCA-CGAa -5'
3633 3' -55.3 NC_001650.1 + 182253 0.66 0.917206
Target:  5'- uGGGCUGuUGCucuGUGG-GCCGGUuGUUg -3'
miRNA:   3'- -CCCGGC-ACGuu-UAUCaCGGCCA-CGAa -5'
3633 3' -55.3 NC_001650.1 + 108866 0.67 0.894852
Target:  5'- aGGCCGUGCAGGUcgggggacaggcgcgAG-GCCGG-GUg- -3'
miRNA:   3'- cCCGGCACGUUUA---------------UCaCGGCCaCGaa -5'
3633 3' -55.3 NC_001650.1 + 50193 0.68 0.870974
Target:  5'- cGGGCUc-GCA---GGUGCCGGUGUc- -3'
miRNA:   3'- -CCCGGcaCGUuuaUCACGGCCACGaa -5'
3633 3' -55.3 NC_001650.1 + 88826 0.68 0.863465
Target:  5'- cGGGCgCGcgGUGAAacugAG-GCCGGUGCUg -3'
miRNA:   3'- -CCCG-GCa-CGUUUa---UCaCGGCCACGAa -5'
3633 3' -55.3 NC_001650.1 + 132341 0.68 0.863465
Target:  5'- gGGGCCcaggGUGU-AGUAGcUGCCGGUGg-- -3'
miRNA:   3'- -CCCGG----CACGuUUAUC-ACGGCCACgaa -5'
3633 3' -55.3 NC_001650.1 + 136780 0.7 0.758933
Target:  5'- gGGGCUgGUGCGgcGAUGGacCCGGUGCg- -3'
miRNA:   3'- -CCCGG-CACGU--UUAUCacGGCCACGaa -5'
3633 3' -55.3 NC_001650.1 + 82604 0.72 0.627834
Target:  5'- cGGGCCuGUGCAGGUGcGUgagGUCGGUGUa- -3'
miRNA:   3'- -CCCGG-CACGUUUAU-CA---CGGCCACGaa -5'
3633 3' -55.3 NC_001650.1 + 68165 0.79 0.301986
Target:  5'- gGGGCCGUGCAccuuggaGAUGGUGgCGGUGg-- -3'
miRNA:   3'- -CCCGGCACGU-------UUAUCACgGCCACgaa -5'
3633 3' -55.3 NC_001650.1 + 41540 1.07 0.004811
Target:  5'- gGGGCCGUGCAAAUAGUGCCGGUGCUUu -3'
miRNA:   3'- -CCCGGCACGUUUAUCACGGCCACGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.