miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3634 3' -48.7 NC_001650.1 + 178177 0.66 0.999151
Target:  5'- gCAG-GUGagUGGGGAGCCuccGGCUc--- -3'
miRNA:   3'- -GUCuCACaaACCCUUCGG---UCGAaaaa -5'
3634 3' -48.7 NC_001650.1 + 11470 0.66 0.999151
Target:  5'- gCAG-GUGagUGGGGAGCCuccGGCUc--- -3'
miRNA:   3'- -GUCuCACaaACCCUUCGG---UCGAaaaa -5'
3634 3' -48.7 NC_001650.1 + 46384 0.66 0.998126
Target:  5'- -cGGGUGggcaGGGAGCCAGCa---- -3'
miRNA:   3'- guCUCACaaacCCUUCGGUCGaaaaa -5'
3634 3' -48.7 NC_001650.1 + 73463 0.67 0.99731
Target:  5'- cCAGgcuGGUGUUgaGGGuGGCCAGCUc--- -3'
miRNA:   3'- -GUC---UCACAAa-CCCuUCGGUCGAaaaa -5'
3634 3' -48.7 NC_001650.1 + 175228 0.67 0.99731
Target:  5'- gGGGGUGUgUGGGuGGUgGGCUa--- -3'
miRNA:   3'- gUCUCACAaACCCuUCGgUCGAaaaa -5'
3634 3' -48.7 NC_001650.1 + 8521 0.67 0.99731
Target:  5'- gGGGGUGUgUGGGuGGUgGGCUa--- -3'
miRNA:   3'- gUCUCACAaACCCuUCGgUCGAaaaa -5'
3634 3' -48.7 NC_001650.1 + 93597 0.67 0.99731
Target:  5'- aCAGGGUGg--GGGugcccaucuuGGCCAGCg---- -3'
miRNA:   3'- -GUCUCACaaaCCCu---------UCGGUCGaaaaa -5'
3634 3' -48.7 NC_001650.1 + 147652 0.67 0.996802
Target:  5'- gGGGGUGagccggUGGGAAGCgCGGCc---- -3'
miRNA:   3'- gUCUCACaa----ACCCUUCG-GUCGaaaaa -5'
3634 3' -48.7 NC_001650.1 + 42509 0.67 0.996802
Target:  5'- cCAGuGUGUUUGGGcAGGUgGGCc---- -3'
miRNA:   3'- -GUCuCACAAACCC-UUCGgUCGaaaaa -5'
3634 3' -48.7 NC_001650.1 + 87106 0.68 0.994783
Target:  5'- gCAGGGUGUUgggGGGGAuGCCcuGCUc--- -3'
miRNA:   3'- -GUCUCACAAa--CCCUU-CGGu-CGAaaaa -5'
3634 3' -48.7 NC_001650.1 + 39224 0.68 0.993917
Target:  5'- -uGAGUGUggucUGGGAGGUgGGCa---- -3'
miRNA:   3'- guCUCACAa---ACCCUUCGgUCGaaaaa -5'
3634 3' -48.7 NC_001650.1 + 58639 0.68 0.990607
Target:  5'- cCAGGGUGgggUUGGGggGCaGGUg---- -3'
miRNA:   3'- -GUCUCACa--AACCCuuCGgUCGaaaaa -5'
3634 3' -48.7 NC_001650.1 + 41476 0.75 0.852928
Target:  5'- uGGGGUGgUUGGGAAGgCAGUUUUg- -3'
miRNA:   3'- gUCUCACaAACCCUUCgGUCGAAAaa -5'
3634 3' -48.7 NC_001650.1 + 41721 0.96 0.083897
Target:  5'- aCAGAGUG-UUGGGAAGCCAGCUUUUUu -3'
miRNA:   3'- -GUCUCACaAACCCUUCGGUCGAAAAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.