miRNA display CGI


Results 1 - 20 of 145 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3634 5' -49.8 NC_001650.1 + 118265 0.66 0.998524
Target:  5'- gGUGCGccacGGGCUGUacucgUCCAGCCuGCCCg -3'
miRNA:   3'- -UAUGU----UUUGACGgaa--GGGUUGG-UGGG- -5'
3634 5' -49.8 NC_001650.1 + 50503 0.66 0.998524
Target:  5'- uUugGGcGCUcGCCgucUCCCccgccGCCGCCCg -3'
miRNA:   3'- uAugUUuUGA-CGGa--AGGGu----UGGUGGG- -5'
3634 5' -49.8 NC_001650.1 + 121267 0.66 0.998524
Target:  5'- cGUGC-AGACgGCCUgcUCCaacaagAGCCACCUg -3'
miRNA:   3'- -UAUGuUUUGaCGGA--AGGg-----UUGGUGGG- -5'
3634 5' -49.8 NC_001650.1 + 163474 0.66 0.998524
Target:  5'- -aGCAGcuACcGCCUcgCCCcgcuCCACCCg -3'
miRNA:   3'- uaUGUUu-UGaCGGAa-GGGuu--GGUGGG- -5'
3634 5' -49.8 NC_001650.1 + 148598 0.66 0.998524
Target:  5'- cGUACuuacccuCUGCaccCCCcACCACCCu -3'
miRNA:   3'- -UAUGuuuu---GACGgaaGGGuUGGUGGG- -5'
3634 5' -49.8 NC_001650.1 + 58856 0.66 0.998524
Target:  5'- -gGCGGAccaccacCUGCCc-CCCAACCccACCCu -3'
miRNA:   3'- uaUGUUUu------GACGGaaGGGUUGG--UGGG- -5'
3634 5' -49.8 NC_001650.1 + 125252 0.66 0.998524
Target:  5'- -gGCGAGGC-GCCccgCCCGGcguccuCCGCCCc -3'
miRNA:   3'- uaUGUUUUGaCGGaa-GGGUU------GGUGGG- -5'
3634 5' -49.8 NC_001650.1 + 132121 0.66 0.998524
Target:  5'- -aGCAGGAa-GCCcgCCCuggcCCGCCCg -3'
miRNA:   3'- uaUGUUUUgaCGGaaGGGuu--GGUGGG- -5'
3634 5' -49.8 NC_001650.1 + 27344 0.66 0.998524
Target:  5'- ---aAGGACUGCCUcUCCAggGCCccgaugagGCCCg -3'
miRNA:   3'- uaugUUUUGACGGAaGGGU--UGG--------UGGG- -5'
3634 5' -49.8 NC_001650.1 + 110728 0.66 0.998222
Target:  5'- -aGCAGcAACaGCCUcagcagcCCCAgcaGCCGCCCc -3'
miRNA:   3'- uaUGUU-UUGaCGGAa------GGGU---UGGUGGG- -5'
3634 5' -49.8 NC_001650.1 + 131554 0.66 0.998222
Target:  5'- cGUACAGGGCccCCggCCgGGCCcACCCg -3'
miRNA:   3'- -UAUGUUUUGacGGaaGGgUUGG-UGGG- -5'
3634 5' -49.8 NC_001650.1 + 155568 0.66 0.998222
Target:  5'- -cAUAGAGCUcgaggccaacGCC-UCCgAGCUGCCCg -3'
miRNA:   3'- uaUGUUUUGA----------CGGaAGGgUUGGUGGG- -5'
3634 5' -49.8 NC_001650.1 + 181982 0.66 0.998222
Target:  5'- -gGCGGGGCcgucCCUUCCCccccAGCgGCCCg -3'
miRNA:   3'- uaUGUUUUGac--GGAAGGG----UUGgUGGG- -5'
3634 5' -49.8 NC_001650.1 + 127834 0.66 0.998222
Target:  5'- uGUGCgAGAACUGCCUcauguugCCUAugaagguguCCACCUc -3'
miRNA:   3'- -UAUG-UUUUGACGGAa------GGGUu--------GGUGGG- -5'
3634 5' -49.8 NC_001650.1 + 15275 0.66 0.998222
Target:  5'- -gGCGGGGCcgucCCUUCCCccccAGCgGCCCg -3'
miRNA:   3'- uaUGUUUUGac--GGAAGGG----UUGgUGGG- -5'
3634 5' -49.8 NC_001650.1 + 133433 0.66 0.998222
Target:  5'- ----cGGGCgGCCcgcUCCCAGCC-CCCa -3'
miRNA:   3'- uauguUUUGaCGGa--AGGGUUGGuGGG- -5'
3634 5' -49.8 NC_001650.1 + 157033 0.66 0.998087
Target:  5'- cUGCu--GCUGCCUcaccagCCCGuugcugaaccuguCCACCCu -3'
miRNA:   3'- uAUGuuuUGACGGAa-----GGGUu------------GGUGGG- -5'
3634 5' -49.8 NC_001650.1 + 16024 0.66 0.997869
Target:  5'- -gGCcac-CUGCCUaCCUAcuuaccugGCCACCCg -3'
miRNA:   3'- uaUGuuuuGACGGAaGGGU--------UGGUGGG- -5'
3634 5' -49.8 NC_001650.1 + 68475 0.66 0.997869
Target:  5'- gGUGCGccgggggagGAGCgacGUCUUCUgGACCACCa -3'
miRNA:   3'- -UAUGU---------UUUGa--CGGAAGGgUUGGUGGg -5'
3634 5' -49.8 NC_001650.1 + 73326 0.66 0.997869
Target:  5'- -gACAGGACcucGUCcgUCCgGACCACCg -3'
miRNA:   3'- uaUGUUUUGa--CGGa-AGGgUUGGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.