miRNA display CGI


Results 1 - 20 of 22 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3635 3' -53.3 NC_001650.1 + 109906 0.66 0.977932
Target:  5'- -cUGGAGUCUGgccucucguaGGAccuGGGCAGCUgcugCUg -3'
miRNA:   3'- ucGCCUCAGAC----------UCU---UCCGUCGAaa--GA- -5'
3635 3' -53.3 NC_001650.1 + 103122 0.66 0.977932
Target:  5'- gGGCGGAGgg-GuAGAuuuuAGGCAGCUa--- -3'
miRNA:   3'- -UCGCCUCagaC-UCU----UCCGUCGAaaga -5'
3635 3' -53.3 NC_001650.1 + 1771 0.66 0.975447
Target:  5'- aGGCaGGGUCUGGGGuggGGGguGCg---- -3'
miRNA:   3'- -UCGcCUCAGACUCU---UCCguCGaaaga -5'
3635 3' -53.3 NC_001650.1 + 163348 0.66 0.975447
Target:  5'- cGCGGGGUC-GGGAAuGGCcGCUa--- -3'
miRNA:   3'- uCGCCUCAGaCUCUU-CCGuCGAaaga -5'
3635 3' -53.3 NC_001650.1 + 26784 0.66 0.972763
Target:  5'- cGCGGAGUUUGAGGagcgggccgGGGgAGCc---- -3'
miRNA:   3'- uCGCCUCAGACUCU---------UCCgUCGaaaga -5'
3635 3' -53.3 NC_001650.1 + 102444 0.66 0.966771
Target:  5'- uGCGccGUCUGguGGGAGGCGGCUccCUg -3'
miRNA:   3'- uCGCcuCAGAC--UCUUCCGUCGAaaGA- -5'
3635 3' -53.3 NC_001650.1 + 121588 0.66 0.963449
Target:  5'- cGCGGGGgcgGcGGAGGGCAGCgcccUCg -3'
miRNA:   3'- uCGCCUCagaC-UCUUCCGUCGaa--AGa -5'
3635 3' -53.3 NC_001650.1 + 120813 0.66 0.963449
Target:  5'- gGGCGGGGgugccCUcGGgcGGCGGCUUUa- -3'
miRNA:   3'- -UCGCCUCa----GAcUCuuCCGUCGAAAga -5'
3635 3' -53.3 NC_001650.1 + 168477 0.66 0.963449
Target:  5'- aGGCaGGGUCUGGGGugGGGguGCg---- -3'
miRNA:   3'- -UCGcCUCAGACUCU--UCCguCGaaaga -5'
3635 3' -53.3 NC_001650.1 + 46908 0.67 0.956126
Target:  5'- aAGUGGGG-CUGGGggGGgGGUUcgCg -3'
miRNA:   3'- -UCGCCUCaGACUCuuCCgUCGAaaGa -5'
3635 3' -53.3 NC_001650.1 + 53262 0.67 0.956126
Target:  5'- gAGCGGGGUCacGGGGAGGUcgaGGCcggggUCg -3'
miRNA:   3'- -UCGCCUCAGa-CUCUUCCG---UCGaa---AGa -5'
3635 3' -53.3 NC_001650.1 + 134137 0.67 0.947864
Target:  5'- uGcCGGGGUCUGGGggGcGCccccAGCUguacUCUg -3'
miRNA:   3'- uC-GCCUCAGACUCuuC-CG----UCGAa---AGA- -5'
3635 3' -53.3 NC_001650.1 + 90123 0.68 0.933647
Target:  5'- cGCGGGGUCUGGGGccucggucaGGGUgaGGCUc--- -3'
miRNA:   3'- uCGCCUCAGACUCU---------UCCG--UCGAaaga -5'
3635 3' -53.3 NC_001650.1 + 60185 0.68 0.928414
Target:  5'- aGGcCGGGGUCUGc--GGGCGGCgggUCa -3'
miRNA:   3'- -UC-GCCUCAGACucuUCCGUCGaa-AGa -5'
3635 3' -53.3 NC_001650.1 + 135072 0.69 0.91061
Target:  5'- gGGCGG-GUCUGAGAucuuuugAGGC-GCUcUCc -3'
miRNA:   3'- -UCGCCuCAGACUCU-------UCCGuCGAaAGa -5'
3635 3' -53.3 NC_001650.1 + 29680 0.69 0.877691
Target:  5'- gAGCuGGAGUUUGAGAAGGUGGa----- -3'
miRNA:   3'- -UCG-CCUCAGACUCUUCCGUCgaaaga -5'
3635 3' -53.3 NC_001650.1 + 122127 0.7 0.838491
Target:  5'- gGGCGGGGUCggcucgGGGGcggGGGCGGCg---- -3'
miRNA:   3'- -UCGCCUCAGa-----CUCU---UCCGUCGaaaga -5'
3635 3' -53.3 NC_001650.1 + 36020 0.71 0.793505
Target:  5'- aGGCGGGGUCgGGGGAGGCgcccaggAGCgugCUc -3'
miRNA:   3'- -UCGCCUCAGaCUCUUCCG-------UCGaaaGA- -5'
3635 3' -53.3 NC_001650.1 + 60518 0.72 0.785123
Target:  5'- cGcCGGGGUcCUGGGcaGAGGCGGCggUCUg -3'
miRNA:   3'- uC-GCCUCA-GACUC--UUCCGUCGaaAGA- -5'
3635 3' -53.3 NC_001650.1 + 41473 0.77 0.490904
Target:  5'- gAGUGGGGUggUUGGGAAGGCAGUUUUg- -3'
miRNA:   3'- -UCGCCUCA--GACUCUUCCGUCGAAAga -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.