miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3635 5' -45.9 NC_001650.1 + 158850 0.66 0.999993
Target:  5'- aACACAAAcCUGCCcUCUgCAggggaaaaUUCGCUg -3'
miRNA:   3'- -UGUGUUUuGACGGaAGA-GU--------AAGUGAg -5'
3635 5' -45.9 NC_001650.1 + 5164 0.66 0.999986
Target:  5'- uCGCcuAAuCUGCCUagcaacccucuUCUCAUUgGCUCu -3'
miRNA:   3'- uGUGuuUU-GACGGA-----------AGAGUAAgUGAG- -5'
3635 5' -45.9 NC_001650.1 + 171871 0.66 0.999986
Target:  5'- uCGCcuAAuCUGCCUagcaacccucuUCUCAUUgGCUCu -3'
miRNA:   3'- uGUGuuUU-GACGGA-----------AGAGUAAgUGAG- -5'
3635 5' -45.9 NC_001650.1 + 176352 0.66 0.99998
Target:  5'- cCACcuGAGCUGCUagUCUCGUagugUCACUUu -3'
miRNA:   3'- uGUGu-UUUGACGGa-AGAGUA----AGUGAG- -5'
3635 5' -45.9 NC_001650.1 + 9645 0.66 0.99998
Target:  5'- cCACcuGAGCUGCUagUCUCGUagugUCACUUu -3'
miRNA:   3'- uGUGu-UUUGACGGa-AGAGUA----AGUGAG- -5'
3635 5' -45.9 NC_001650.1 + 166501 0.67 0.99991
Target:  5'- aGCACcaacuuuaAAAugUGCCUaaaaacUCUCAcugugggcccUUCACUCa -3'
miRNA:   3'- -UGUG--------UUUugACGGA------AGAGU----------AAGUGAG- -5'
3635 5' -45.9 NC_001650.1 + 40521 0.69 0.999461
Target:  5'- uCACAGAgaaucACUGCaauaccuCUcCUCGUUCACUCu -3'
miRNA:   3'- uGUGUUU-----UGACG-------GAaGAGUAAGUGAG- -5'
3635 5' -45.9 NC_001650.1 + 108918 0.71 0.997368
Target:  5'- uACGCGGAGCUgGCCUUCUCccugggcCACcUCa -3'
miRNA:   3'- -UGUGUUUUGA-CGGAAGAGuaa----GUG-AG- -5'
3635 5' -45.9 NC_001650.1 + 41688 0.78 0.890265
Target:  5'- gAUACAAAACUGCCUUCcCAaccacccCACUCg -3'
miRNA:   3'- -UGUGUUUUGACGGAAGaGUaa-----GUGAG- -5'
3635 5' -45.9 NC_001650.1 + 41695 0.79 0.833303
Target:  5'- -aAgAAAGCUGCCUUCUCAgacucCGCUCg -3'
miRNA:   3'- ugUgUUUUGACGGAAGAGUaa---GUGAG- -5'
3635 5' -45.9 NC_001650.1 + 41871 1.1 0.026636
Target:  5'- uACACAAAACUGCCUUCUCAUUCACUCc -3'
miRNA:   3'- -UGUGUUUUGACGGAAGAGUAAGUGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.