miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3636 5' -55.6 NC_001650.1 + 134706 0.66 0.942135
Target:  5'- cCCCcGGaugCCCCaGAGGCGGCUgAGa -3'
miRNA:   3'- uGGGaUCga-GGGGaCUCUGUUGAgUC- -5'
3636 5' -55.6 NC_001650.1 + 155325 0.66 0.94075
Target:  5'- cACCCUgaaguugagccagaGGCUCUC---GGGCAGCUCGGa -3'
miRNA:   3'- -UGGGA--------------UCGAGGGgacUCUGUUGAGUC- -5'
3636 5' -55.6 NC_001650.1 + 19232 0.66 0.937434
Target:  5'- gGCCCUcggucuacucAGCUCUCCc-AGACAAC-CGGg -3'
miRNA:   3'- -UGGGA----------UCGAGGGGacUCUGUUGaGUC- -5'
3636 5' -55.6 NC_001650.1 + 56535 0.66 0.935978
Target:  5'- aGCCCUAGCcuauacucauaaCCCCagagGAGAgcgccgcgagggcCAACUCAGc -3'
miRNA:   3'- -UGGGAUCGa-----------GGGGa---CUCU-------------GUUGAGUC- -5'
3636 5' -55.6 NC_001650.1 + 79474 0.66 0.932496
Target:  5'- gACCCUcuGGCUgCCCUGAuuuuagguuuuGAUuuccuagaacgGGCUCAGa -3'
miRNA:   3'- -UGGGA--UCGAgGGGACU-----------CUG-----------UUGAGUC- -5'
3636 5' -55.6 NC_001650.1 + 149704 0.66 0.927319
Target:  5'- uCCCgggccGCUCUCUgGAGAUGAUUCAGg -3'
miRNA:   3'- uGGGau---CGAGGGGaCUCUGUUGAGUC- -5'
3636 5' -55.6 NC_001650.1 + 45386 0.66 0.921904
Target:  5'- aGCCCguacAGUUCCCCUaGGGuguGCAGCcgCAGc -3'
miRNA:   3'- -UGGGa---UCGAGGGGA-CUC---UGUUGa-GUC- -5'
3636 5' -55.6 NC_001650.1 + 133919 0.66 0.91625
Target:  5'- cGCCCcccGCUCCCaguuuucaGAGGCAGCcgCAGg -3'
miRNA:   3'- -UGGGau-CGAGGGga------CUCUGUUGa-GUC- -5'
3636 5' -55.6 NC_001650.1 + 61373 0.66 0.91625
Target:  5'- cACCCUAGCggcgagcgcguuUCUCCUGAGACuugaagCAa -3'
miRNA:   3'- -UGGGAUCG------------AGGGGACUCUGuuga--GUc -5'
3636 5' -55.6 NC_001650.1 + 142752 0.67 0.884462
Target:  5'- gACCCcgugagcGCUCCCUUGAGG-AACUCGc -3'
miRNA:   3'- -UGGGau-----CGAGGGGACUCUgUUGAGUc -5'
3636 5' -55.6 NC_001650.1 + 30425 0.67 0.877421
Target:  5'- cGCCCUggaggcgcucGGCgagacgguggCCUuuCUGGGGCGGCUCAGg -3'
miRNA:   3'- -UGGGA----------UCGa---------GGG--GACUCUGUUGAGUC- -5'
3636 5' -55.6 NC_001650.1 + 21841 0.68 0.862689
Target:  5'- gACCCcAGC-CCCgc-GGGCAGCUCAGa -3'
miRNA:   3'- -UGGGaUCGaGGGgacUCUGUUGAGUC- -5'
3636 5' -55.6 NC_001650.1 + 32198 0.68 0.839051
Target:  5'- cCCCUAGCUCaCCaGAGGCgGACUCc- -3'
miRNA:   3'- uGGGAUCGAGgGGaCUCUG-UUGAGuc -5'
3636 5' -55.6 NC_001650.1 + 164656 0.69 0.830786
Target:  5'- cACCCgGGCUCCCggGGGACcgcggcGCUCAa -3'
miRNA:   3'- -UGGGaUCGAGGGgaCUCUGu-----UGAGUc -5'
3636 5' -55.6 NC_001650.1 + 66881 0.69 0.830786
Target:  5'- uCCCUGaggguGCUCCCCcGGGACGGCa--- -3'
miRNA:   3'- uGGGAU-----CGAGGGGaCUCUGUUGaguc -5'
3636 5' -55.6 NC_001650.1 + 129974 0.69 0.796006
Target:  5'- cGCCCgUGGCgcgggCCCUGAGGCuGCUgAGg -3'
miRNA:   3'- -UGGG-AUCGag---GGGACUCUGuUGAgUC- -5'
3636 5' -55.6 NC_001650.1 + 131120 0.7 0.777696
Target:  5'- uCCCUccggGGCgCCCCUGAGACuggcGCcCAGg -3'
miRNA:   3'- uGGGA----UCGaGGGGACUCUGu---UGaGUC- -5'
3636 5' -55.6 NC_001650.1 + 120715 0.7 0.749278
Target:  5'- gGCaCCU-GCUCCCCgaagGAGGCcaccCUCAGg -3'
miRNA:   3'- -UG-GGAuCGAGGGGa---CUCUGuu--GAGUC- -5'
3636 5' -55.6 NC_001650.1 + 106814 0.7 0.749278
Target:  5'- cCCCUAGCUCgucuCCCggGAGACGAC-CGa -3'
miRNA:   3'- uGGGAUCGAG----GGGa-CUCUGUUGaGUc -5'
3636 5' -55.6 NC_001650.1 + 179183 0.7 0.739588
Target:  5'- gACCCUAGC-CCCCaugaagagGAGACcACUUAu -3'
miRNA:   3'- -UGGGAUCGaGGGGa-------CUCUGuUGAGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.